I am having an issue with the XML package failing on a basic function. This
makes packages that depend on this function also fail:
> library(XML)
> newXMLNode("bob")
I/O error : flush error
I can’t find any reference to the error online
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-apple-darwin18.6.0 (64-bit)
Running under: macOS 10.15.3
Matrix products: default
BLAS: /Users/gabrielhoffman/Downloads/R-3.6.0/lib/libRblas.dylib
LAPACK: /Users/gabrielhoffman/Downloads/R-3.6.0/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] XML_3.99-0.3
loaded via a namespace (and not attached):
[1] compiler_3.6.0 tools_3.6.0 tcltk_3.6.0
# The expected result is: <bob/>
# This works fine in R 3.5.1 on the same machine
> sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS 10.15.3
Matrix products: default
BLAS:
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] XML_3.99-0.3
loaded via a namespace (and not attached):
[1] compiler_3.5.1 tools_3.5.1
# It also fails on R development version
> sessionInfo()
R Under development (unstable) (2020-03-16 r77979)
Platform: x86_64-apple-darwin19.3.0 (64-bit)
Running under: macOS Catalina 10.15.3
Matrix products: default
BLAS: /Users/gabrielhoffman/Downloads/R-devel/lib/libRblas.dylib
LAPACK: /Users/gabrielhoffman/Downloads/R-devel/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] XML_3.99-0.3
loaded via a namespace (and not attached):
[1] compiler_4.0.0
Best
- Gabriel
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