To avoid the warnings from gc(), call parallel::stopCluster(cl) before
removing or overwriting cl.
-Bill
On Thu, Mar 4, 2021 at 1:52 AM Shah Alam <dr.alamsola...@gmail.com> wrote:
>
> Hello everyone,
>
> I am using the "parallel" R package for parallel computation.
>
> Code:
>
> # set number of cores
> cl <- makeCluster(8, type = "PSOCK") # Mac/Linux need to set as "FORK"
>
> # pass functions and objects to the cluster environment and set seed
> # all the items exported need to stay in the global environment!!
> clusterCall(cl, function() { source("xx.R" )})
> clusterExport(cl, list("a", "b", "c", "d",
> "5"))
> clusterSetRNGStream(cl, 1)
>
> While parallel processing, I receive the following warning signs. Do I
> need to ignore these signs or do they potentially slow the whole process?
>
> * Warning signs:*
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 19
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 18
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 17
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 16
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 15
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 14
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 13
> Warning in for (i in seq_len(Ne + echo)) { :
> closing unused connection 12
>
> Best regards,
> Shah Alam
>
> [[alternative HTML version deleted]]
>
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