On 6/9/21 8:48 PM, peri He wrote:
Dear Friends,
I am running a simple code for rinla. The INLA package is installed
successfully on Rstudio.
Techinically, the package is installed in an R library. You are using
Rstudio as your IDE, but it does not run packages.
But when I run inla (y~x,......) function, I get the following error: could not find
function "inla"
Did anybody have the same problem before?
I would appreciate it if any information is shared.
Regards,
install.packages("INLA", repos = "https://inla.r-inla-download.org/R/stable";,
dep = TRUE)
Despite setting dep=TRUE is still got a warning:
"Warning in install.packages :
dependencies ‘Ecdat’, ‘mpoly’, ‘symmoments’ are not available"
library(INLA)
N = 100 #500, 5000, 25000, 100000
x = rnorm(N, mean=6, sd=2)
y = rnorm(N, mean=x,sd=1)
data = list(x=x, y=y, N=N)
# The likelihood family is �gaussian�
model<- inla(y ~ x, family = c("gaussian"), data = data,
control.predictor=list(link=1))
Summary <- (model)
Despite the warning, INLA installed and loaded without complaint and the
code ran without error.
I later ran:
install.packages(c('Ecdat', 'mpoly', 'symmoments')) # no problems
here either.
So I'm unable to recreate your error.
sessionInfo()
#-------------------
R version 4.0.4 (2021-02-15) #I'm admittedly not up-to-date, If
you are, then provide details
I did check to see if there are any later versions of pkg:INLA and could
not find any
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
base
other attached packages:
[1] INLA_21.02.23 sp_1.4-5 foreach_1.5.1
Matrix_1.3-2 RBGL_1.66.0 graph_1.68.0
[7] BiocGenerics_0.36.0
loaded via a namespace (and not attached):
[1] lattice_0.20-41 codetools_0.2-18 grid_4.0.4
MatrixModels_0.5-0 stats4_4.0.4 splines_4.0.4
[7] iterators_1.0.13 tools_4.0.4 yaml_2.2.1
compiler_4.0.4 BiocManager_1.30.12
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--
David.
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