Hi, I have the same problem, can you tell me how to solve it?
Hello,
I am new to R and am encountering an error message that I cannot find a
solution for.
I am attempting to calculate MPD (mean pairwise distance), without weighting
for abundance, with a community species list and a phylogenetic tree in newick
format with branch lengths.
I have read in both list and tree .txt files and calculated PD without any
problem.
To calculate MPD I have entered:>MPD1=mpd(list,cophenetic(tree))
Error:Error in dis[sppInSample, sppInSample] : subscript out of bounds
Thank you for you helpCheersMarion.
[[alternative HTML version deleted]]
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
