On Wed, 5 Oct 2022 20:02:02 +0000 "Rhon Calderon, Eric" <eric.rhoncalde...@pennmedicine.upenn.edu> wrote:
> automake found. Running autoupdate and autogen.sh. <...> > + libtoolize --copy > autogen.sh: line 43: libtoolize: command not found Since you have automake installed, you also need libtool <https://www.gnu.org/software/libtool/> installed in order to compile this particular package from source. Depending on the HPC, there may be a particular command to "activate" the installation already made by the HPC administrator. I guess you could also report this as a bug in devtools: they check for automake but not libtool. If you can temporarily chmod -x automake, the installation should succeed too, because then the package will not try to regenerate its build system. I don't see why they even try to do that, but maybe that's a workaround for some kind of compatibility problem. > CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh > '/tmp/RtmpMjF6Ns/R.INSTALL4a3cb2204b0da/httpuv/src/libuv/missing' > aclocal-1.16 -I m4 > /tmp/RtmpMjF6Ns/R.INSTALL4a3cb2204b0da/httpuv/src/libuv/missing: line > 81: aclocal-1.16: command not found Make sure your automake installation is working. I think the error is caused by the previous error and may go away once you install libtool, but I may be mistaken regarding that. Do Bioconductor packages really depend on devtools? What do their errors look like? -- Best regards, Ivan ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
