The problem is that I am trying to run this R code : https://github.com/dmalinsk/lv-ida/blob/master/example.R
So I run : library(pcalg) library(igraph) library(RBGL) source("lvida.R") Here is what I get : source("lvida.R") Error in file(filename, "r", encoding = encoding) : cannot open the connection In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'lvida.R': No such file or directory So, I guess the problem is coming from the source not from the libraries? How to solve that problem? Best, Le samedi 22 avril 2023 à 18:30:48 UTC+2, Eric Berger <ericjber...@gmail.com> a écrit : looks fine. what's the problem? On Sat, Apr 22, 2023 at 7:27 PM varin sacha <varinsa...@yahoo.fr> wrote: > Eric, > > Here it is : > > > library(RBGL) > Loading required package: graph > Loading required package: BiocGenerics > > Attaching package: ‘BiocGenerics’ > > The following objects are masked from ‘package:igraph’: > > normalize, path, union > > The following objects are masked from ‘package:stats’: > > IQR, mad, sd, var, xtabs > > The following objects are masked from ‘package:base’: > > anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, > dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, > intersect, is.unsorted, lapply, Map, > mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, > Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, > tapply, union, unique, unsplit, which.max, > which.min > > > Attaching package: ‘graph’ > > The following objects are masked from ‘package:igraph’: > > degree, edges, intersection > > > Attaching package: ‘RBGL’ > > The following objects are masked from ‘package:igraph’: > > bfs, dfs, transitivity > > > > > > > > > > > Le samedi 22 avril 2023 à 18:12:56 UTC+2, Eric Berger <ericjber...@gmail.com> > a écrit : > > > > > > What happens with the command >> library(RBGL) > > > > On Sat, Apr 22, 2023 at 7:08 PM varin sacha via R-help <r-help@r-project.org> > wrote: >> Dear R-experts, >> >> How to solve that problem? >> >> My R version is 4.2.1 >> >> Here below trying to install RGBL library found here : >> https://bioconductor.org/packages/release/bioc/html/RBGL.html >> >> So, I run this R code : >> >> if (!require("BiocManager", quietly = TRUE)) >> install.packages("BiocManager") >> >> BiocManager::install("RBGL") >> >> >> Here is what I get : >> >>> if (!require("BiocManager", quietly = TRUE)) >> + install.packages("BiocManager") >> Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23) >>> >>> BiocManager::install("RBGL") >> Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23) >> Warning message: >> package(s) not installed when version(s) same as or greater than current; >> use `force = TRUE` to re-install: 'RBGL' >> >> ______________________________________________ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.