I am not sure why my messages are not threaded together. Thank you to the author of this post:
https://stat.ethz.ch/pipermail/r-help/2008-August/169691.html
I have tried the suggestions, but I got the same results as in my original query:
https://stat.ethz.ch/pipermail/r-help/2008-August/169647.html

I have considered the issue of partial and sequential sum of squares. Given that the variable x4 (the red herring) entered the model last in the sequence, I thought partial and sequential SS ought to be numerically the same.

However, I later found out that using glm() instead of lm() gave the expected results. See:
https://stat.ethz.ch/pipermail/r-help/2008-August/169673.html
I have read that glm() uses iterative re-weighted least square (which I think is related to maximum likelihood) for fitting whereas lm() uses matrix decomposition. I do expect slightly different answers from these two functions, but not ones that were so far apart!

Now I can use glm() as a workaround, but I just want to make sure there are no bugs in drop1(). Hopefully more people can give their opinions whether there is a bug.

Thomas P C Chu
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