> dim(data) [1] 22283 19 > dm=dist(data, method = "euclidean", diag = FALSE, upper = FALSE, p = 2) Error: cannot allocate vector of size 1.8 Gb
Hi Guys, thank you in advance for helping. :-D Recently I ran into the "cannot allocate vector of size 1.8GB" error. I am pretty sure this is not a hardware limitation because it happens no matter I ran the R code in a 2.0Ghz Core Duo 2GB ram Mac or on a Intel Xeon 2x2.0Ghz quard-core 8GB ram Linux server. I also tried to clear the workspace before running the code too, but it didn't seem to help... Weird thing though is that once in a while it will work, but next when I run clustering on the above result >hc=hclust(dm, method = "complete", members=NULL) it give me the same error... I searched around already, but the memory.limit, memory.size method does not seem to help. May I know what can i do to resolve this problem? Thank you so much for your help. -- View this message in context: http://www.nabble.com/Error%3A-cannot-allocate-vector-of-size-1.8-Gb-tp21133949p21133949.html Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
