Hi All,
Sorry to bother everyone again.Ofcourse Prof Ripley ,Yihui and Uwe had
replied to my email.But this segmentation fault error was not solved.I agree
with Prof Ripley,as he said my R and all other configurations,are very
old.But what i don't understand is ,i was able to run analysis till few days
before,and why suddenly this error.
*The configuartions i use:---*
*R-version
*
*> version*
* _*
*platform i486-pc-linux-gnu*
*arch i486*
*os linux-gnu*
*system i486, linux-gnu*
*status Patched*
*major 2*
*minor 4.0*
*year 2006*
*month 11*
*day 25*
*svn rev 39997*
*language R*
* *
*R-Package Version *
*DBI "0.1-11" *
*RMySQL "0.5-11" *
* *
*MySQL version: 5.0.32*
*A small R- program* *also doesn't run now*,whereas with these same
configurations,i ran correlation analysis,regression analysis for my
datasets.
Now if i do this :---
*library(RMySQL)
myDbconnect<-function(dbName,hostName)
{
print("myDbconnect print before driver")
drv<-MySQL()
#print(drv)
print("myDbconnect print after driver")
#con <- dbConnect(drv, user="xyz", password="xyz",dbname = dbName, host
= hostName)
con<-dbConnect(drv)
print("myDbconnect print after connecting the db")
return(con)
}
main<-function()
{
print("inside main")
dbName<-"AHP2006"
hostName<-"mia.foresightint.com"
con<-myDbconnect(dbName,hostName)
print("hello hello")
}
main()*
Before driver and after driver both the text inside print function are
printed.But in the dbconnect some error occurs.*I do not have access to the
packages,my seniors have that*.All i do is with the scripts.All i read about
segmentation fault is some faulty C-code in the packages.I think the problem
is with DBI package.Just wanted to know* other than any error in the
packages, can a segmentation fault happen*?Because i was not informed about
any changes made in the packages.Where am i going wrong?
*Error:---------------*
*> source("sample.R")
Loading required package: DBI
[1] "inside main"
[1] "myDbconnect print before driver"
[1] "myDbconnect print after driver"
*** caught segfault ***
address 0x55, cause 'memory not mapped'
Traceback:
1: .Call("RS_MySQL_newConnection", drvId, con.params, groups,
default.file, PACKAGE = .MySQLPkgName)
2: mysqlNewConnection(drv, ...)
3: .class1(object)
4: .class1(object)
5: is(object, Cl)
6: .valueClassTest(standardGeneric("dbConnect"), "DBIConnection",
"dbConnect")
7: dbConnect(drv, user = "xyz", password = "xyz", dbname = dbName, host
= hostName)
8: myDbconnect(dbName, hostName)
9: main()
10: eval.with.vis(expr, envir, enclos)
11: eval.with.vis(ei, envir)
12: source("sample.R")
Possible actions:
1: abort (with core dump)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection:
*
I tried doing some debugging.But could not find a solution.
If i do back tracing :----
> *dbConnect*
standardGeneric for "dbConnect" defined from package "DBI"
defined with value class: "DBIConnection"
function (drv, ...)
.valueClassTest(standardGeneric("dbConnect"), "DBIConnection",
"dbConnect")
<environment: 0x839e7e0>
Methods may be defined for arguments: drv
> *methods:::.valueClassTest*
*function (object, classes, fname)*
*{*
* if (length(classes) > 0) {*
* for (Cl in classes) if (is(object, Cl))*
* return(object)*
* stop(gettextf("invalid value from generic function \"%s\", class
\"%s\", expected %s",*
* fname, class(object), paste("\"", classes, "\"",*
* sep = "", collapse = " or ")), domain = NA)*
* }*
* object*
*}*
*> mysqlNewConnection*
*function (drv, dbname = "", username = "", password = "", host = "",*
* unix.socket = "", port = 0, client.flag = 0, groups = NULL,*
* default.file = character(0))*
*{*
* if (!isIdCurrent(drv))*
* stop("expired manager")*
* con.params <- as.character(c(username, password, host, dbname,*
* unix.socket, port, client.flag))*
* groups <- as.character(groups)*
* if (length(default.file) == 1) {*
* default.file <- file.path(dirname(default.file),
basename(default.file))*
* if (!file.exists(default.file))*
* stop(sprintf("mysql default file %s does not exist",*
* default.file))*
* }*
* drvId <- as(drv, "integer")*
* conId <- .Call("RS_MySQL_newConnection", drvId, con.params,*
* groups, default.file, PACKAGE = .MySQLPkgName)
// here it gets stopped,traceback line 1*
* new("MySQLConnection", Id = conId)*
*}*
--
Thanks in advance
Moumita
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