We will try to quickly get out a new version of Design that checks for
the version of survival that is installed and uses a different .C call
accordingly. This will involve ignoring (for now) the new weights
option Terry has implemented.
Frank
Terry Therneau wrote:
A couple additions to Thomas's message.
The 'survest' function in design directly called C routines in the survival
package. The argument list to the routines changed due to the addition of
weights; calling a C routine with the wrong arguments is one of the more
reliable ways to crash a program. The simplest (short term) solution is to use
survfit for your curves rather than survest. Frank Harrell has been aware of
the issue for several weeks and is working hard on solving it. The simple fix
is a few minutes, but he's thinking about how to avoid any future problems. The
C routines in survival change arguments VERY rarely, but direcly calling the
routines of another package is considered dangerous in general.
Most breakage was less severe. For instance there were a couple of errors in
the PBC data set. I fixed these, and also replaced all the "999" codes with NA
to make it easier to use. Some other packages use this data. (My name is on
most of the PBC papers and I have the master PBC data with all labs, patient id,
etc, but I was not the source of the first data set).
We'll be keeping an eye on the R list as the package rolls out; sending a
message directly to Thomas and/or I would also be appreciated for issues like
this.
Terry Therneau
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Frank E Harrell Jr Professor and Chair School of Medicine
Department of Biostatistics Vanderbilt University
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