Thanks for your response Gavin. I get the same error as I noted before when
running the example from bagEarth.
earth and caret are the most recent versions (on the MAC) available on CRAN
binaries, 2.0-5 and 3.45 respectively.
I see that the CRAN checks for caret lists an error status for version 4.15
r-release-macosx-ix86, which is probably why it is not available in binary
form. I also suspect, but am not sure, that this is why varImp fails.
Joe
--- On Sat, 5/16/09, Gavin Simpson <gavin.simp...@ucl.ac.uk> wrote:
From: Gavin Simpson <gavin.simp...@ucl.ac.uk>
Subject: Re: [R] bagged importance estimates in earth problem
To: "Joseph Retzer" <joe_ret...@yahoo.com>
Cc: "R help" <r-h...@stat.math.ethz.ch>
Date: Saturday, May 16, 2009, 5:19 PM
On Sat, 2009-05-16 at 08:57 -0700, Joseph Retzer wrote:
> I was trying to produced bagged importance estimates of attributes in earth
> using the caret package with the following commands:
>
> fit2 <- bagEarth(loyalty ~ ., data=model1, B = 10)
> bagImpGCV <- varImp(fit2,value="gcv")
>
> My bootstrap estimates are produced however the second command "varImp"
> produces the following error:
>
> Error in UseMethod("varImp") : no applicable method for "varImp"
>
> Not sure what is going on, any advice would be appreciated,
The example in ?bagEarth works for me with caret and earth loaded
> library(earth)
> data(trees)
> fit1 <- earth(trees[,-3], trees[,3])
> fit2 <- bagEarth(trees[,-3], trees[,3], B = 10)
> varImp(fit2)
Overall
Girth 100.000000
Height 2.387985
> packageDescription("earth")$Version
[1] "2.3-2"
> packageDescription("caret")$Version
[1] "4.15"
Have you loaded the relevant packages and are they up-to-date? Can you
run the example above?
If the example works, then you'll probably need to supply data and code
that fails for you or contact the package maintainer for expert help.
HTH
G
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