Dear all,
I am doing my first steps with odfWeave.
After running the r code (see below), I am trying to open the ODF-document
with open office, but I am getting the error message:
"The file is damaged, but it can be repaired". If I confirm the question and
repair the file with open office, I can open it with the desired output,
which seems to be fine.
My system:
R Version 2.9.1
Open Office 3.0.1
7-Zip 4.65
Windows XP
Using zip (http://www.info-zip.org/, zip232xN.zip) had the same result.
What causes the error message? Is the structure of the ODF document
as it should be (for the structure please have a look at the bottom of
this mail)?
I'd greatly appreciate any help.
Udo K o e n i g
Clinic for Child and Adolescent Psychiatry
Philipps University of Marburg, Germany
#######################################################################
#R code
library(odfWeave)
#odfWeave call
odfWeave("c:/temp/odfWeave-test.odt", "c:/temp/odfWeave-test-out.odt",
control=odfWeaveControl(zipCmd = c("7z a -tzip $$file$$ .",
"7z e -tzip $$file$$")))
#######################################################################
# Contents of my Open office document
<<Initiate, results = hide, echo= FALSE>>=
#First steps with odfWeave
attach(iris)
@
There are \Sexpr{length(iris[, 1])} observations.
<<Table, echo=FALSE, results= xml>>=
odfTable(iris[1:5,])
@
<<Table2, echo=FALSE, results= xml>>=
tab <- round(apply(iris[, 1:4], 2, mean), 2)
odfTable(tab, horizontal= TRUE)
@
<<Boxplot, echo=FALSE, fig=TRUE>>=
boxplot(Sepal.Length~Species)
@
#######################################################################
#Log
odfWeave("c:/temp/odfWeave-test.odt", "c:/temp/odfWeave-test-out.odt",
+ control=odfWeaveControl(zipCmd = c("7z a -tzip $$file$$ .",
+ "7z e -tzip $$file$$")))
Copying c:/temp/odfWeave-test.odt
Setting wd to
C:\DOCUME~1\Udo_2\LOCALS~1\Temp\Rtmp6QrXgk/odfWeave05190748330
Unzipping ODF file using 7z e -tzip "odfWeave-test.odt"
7-Zip 4.65 Copyright (c) 1999-2009 Igor Pavlov 2009-02-03
Processing archive: odfWeave-test.odt
Extracting mimetype
Extracting Configurations2\statusbar
Extracting Configurations2\accelerator\current.xml
Extracting Configurations2\floater
Extracting Configurations2\popupmenu
Extracting Configurations2\progressbar
Extracting Configurations2\menubar
Extracting Configurations2\toolbar
Extracting Configurations2\images\Bitmaps
Extracting content.xml
Extracting styles.xml
Extracting meta.xml
Extracting Thumbnails\thumbnail.png
Extracting settings.xml
Extracting META-INF\manifest.xml
Everything is Ok
Folders: 7
Files: 8
Size: 28518
Compressed: 8768
Removing odfWeave-test.odt
Creating a Pictures directory
Pre-processing the contents
Sweaving content.Rnw
Writing to file content_1.xml
Processing code chunks ...
1 : term hide(label=Initiate)
2 : term xml(label=Table)
3 : term xml(label=Table2)
4 : term verbatim(label=Boxplot)
'content_1.xml' has been Sweaved
Removing content.xml
Post-processing the contents
Removing content.Rnw
Removing styles.xml
Renaming styles_2.xml to styles.xml
Removing extra files
Packaging file using 7z a -tzip "odfWeave-test.odt" .
7-Zip 4.65 Copyright (c) 1999-2009 Igor Pavlov 2009-02-03
Scanning
Creating archive odfWeave-test.odt
Compressing content.xml
Compressing current.xml
Compressing manifest.xml
Compressing meta.xml
Compressing mimetype
Compressing Pictures\content_1-Boxplot.png
Compressing settings.xml
Compressing styles.xml
Compressing thumbnail.png
Everything is Ok
Copying odfWeave-test.odt
Resetting wd
Removing C:\DOCUME~1\Udo_2\LOCALS~1\Temp\Rtmp6QrXgk/odfWeave05190748330
Done
#######################################################################
#Structure of the unzipped odf-document that produced the error message
05.07.2009 11:43 <DIR> Bitmaps
05.07.2009 19:07 13.820 content.xml
05.07.2009 11:43 0 current.xml
05.07.2009 11:43 <DIR> floater
05.07.2009 11:43 1.889 manifest.xml
05.07.2009 11:43 <DIR> menubar
05.07.2009 11:43 968 meta.xml
05.07.2009 11:43 39 mimetype
05.07.2009 22:18 <DIR> Pictures
05.07.2009 11:43 <DIR> popupmenu
05.07.2009 11:43 <DIR> progressbar
05.07.2009 11:43 7.993 settings.xml
05.07.2009 11:43 <DIR> statusbar
05.07.2009 19:07 13.281 styles.xml
05.07.2009 11:43 1.579 thumbnail.png
05.07.2009 11:43 <DIR> toolbar
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