On 7/14/2009 8:56 AM, deepak m r wrote:
Hi,
Empty plot is getting i dont know why. can u please clarify how
can i use Print function instead of plot function.
You need print() if you are using grid-based graphics (lattice, ggplot2,...) in a script. You are using classic graphics so it should not be necessary.
If you are getting blank plots when you shouldn't, that's a bug. If you can put together a reproducible example that shows its a bug in R, rather than a bug in your script, it will likely be fixed fairly quickly.
Duncan Murdoch
best regards deepak On Tue, Jul 14, 2009 at 7:48 AM, Petr PIKAL<petr.pi...@precheza.cz> wrote:Hi For this type of problems I do multipage pdf. pdf("file", ....) for (i in ...) { do all stuff including plot } dev.off() and then check the plots afterwards. Recently there was some post about how to wait but you do not want only wait you want also to interactively change plotting parameters, won't you. cat("\n","Enter x","\n") # prompt x=scan(n=1) # read 1 line from console this construction print something on console and reads one line from console. There are also some packages which leave you choose from several options. I think in car and randomForest are such routines so you could check how it is done. Regards Petr r-help-boun...@r-project.org napsal dne 14.07.2009 13:17:01:hi, is there any wait function in R. I am running one R script to plot many graphs it is in the for loop. its showing no error but its not plotting well I think i can solve this problem with a wait function. Please help me in this regards. If u need any clarification about programme. u can find the script below. best regards, Deepak.M.R Biocomputing Group University of Bologana. #!/usr/bin/R s<-c("GG","GA","GV","GL","GI","GM","GF","GW","GP","GS","GT","GC","GY","GN","GQ","GD","GE","GK","GR","GH","AA","AV","AL","AI","AM","AF","AW","AP","AS","AT","AC","AY","AN","AQ","AD","AE","AK","AR","AH","VV","VL","VI","VM","VF","VW","VP","VS","VT","VC","VY","VN","VQ","VD","VE","VK","VR","VH","LL","LI","LM","LF","LW","LP","LS","LT","LC","LY","LN","LQ","LD","LE","LK","LR","LH","II","IM","IF","IW","IP","IS","IT","IC","IY","IN","IQ","ID","IE","IK","IR","IH","MM","MF","MW","MP","MS","MT","MC","MY","MN","MQ","MD","ME","MK","MR","MH","FF","FW","FP","FS","FT","FC","FY","FN","FQ","FD","FE","FK","FR","FH","WW","WP","WS","WT","WC","WY","WN","WQ","WD","WE","WK","WR","WH","PP","PS","PT","PC","PY","PN","PQ","PD","PE","PK","PR","PH","SS","ST","SC","SY","SN","SQ","SD","SE","SK","SR","SH","TT","TC","TY","TN","TQ","TD","TE","TK","TR","TH","CC","CY","CN","CQ","CD","CE","CK","CR","CH","YY","YN","YQ","YD","YE","YK","YR","YH","NN","NQ","ND","NE","NK","NR","NH","QQ","QD","QE","QK","QR","QH","DD","DE"!
,"DK","DR","DH","EE","EK","ER","EH","KK","KR","KH","RR","RH","HH") for(t in 1:length(s)) {a<-read.table(paste("../All_alpha_proteins/alp",s[t],"mean.sat",sep=""),header=T)attach (a) names(a) al<-1:length(paste("alp",s[t],"_mean",sep=""))b<-read.table(paste("../All_beta_proteins/bet",s[t],"mean.sat",sep=""),header=T)attach(b) names(b) bl<-1:length(paste("bet",s[t],"_mean",sep="")) p<-read.table(paste("../Alpha_and_beta_proteins_a+b/apb",s [t],"mean.sat",sep=""),header=T) attach(p) names(p) pl<-1:length(paste("apb",s[t],"_mean",sep="")) o<-read.table(paste("../Alpha_and_beta_proteins_aorb/aob",s [t],"mean.sat",sep=""),header=T) attach(o) names(o) ol<-1:length(paste("aob",s[t],"_mean",sep="")) postscript(file=paste("Mean_",s[t],"_Plot.ps",sep="")) plot(0,xlim=c(0,160),ylim=c(0,70),main=paste("Mean Distance Plot for ",s[t]," Rsidue pair",sep=""),ylab="Mean Distance in Angstrom",xlab="Residue Seperation Number") lines(al,paste("alp",s[t],"_mean",sep=""),col="blue",lty = 2) lines(bl,paste("bet",s[t],"_mean",sep=""),col="yellow",lty = 2) lines(pl,paste("apb",s[t],"_mean",sep=""),col="red",lty = 2) lines(ol,paste("aob",s[t],"_mean",sep=""),col="green",lty = 2) legend("topleft",c("Alpha Proteins","Beta Proteins","Alpha + Beta","Alpha or Beta"),lty = c(2,2,2,2),col=c("blue","yellow","red","green")) dev.off() } ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guidehttp://www.R-project.org/posting-guide.htmland provide commented, minimal, self-contained, reproducible code.______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
