Hi,
I'm looking for an efficient code that will enable me to reshuffle data
(phenotype) for certain number of individuals and creating a loop that will
randomly simulate it for 10000 times *(permutation)*. I also need to find
how I keep the information (p value for each SNP) gathered for all the 10000
iterations.
My data set looks like this (n=500):
Individual #
Phenotype
SNP1
SNP2
SNP3
SNP4
SNP5
SNP6
SNP7
SNP8
SNP9
SNP10
SNP11
SNP12
1
0
T
T
G
G
A
C
G
T
A
A
T
C
2
1
A
T
C
G
A
C
G
T
A
G
T
C
Many thanks,
Jonathan
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