d.le...@warwick.ac.uk wrote: > Hello, > > In limmaGUI, after running a linear model for a single gene & time point > (mutant vs control), the venn-diagram for differentially expressed genes > with a p-value cut-off gives a different number than the top-table with > the same cut-off (2600 vs. 791). > > I have seen the same thing happen before for multiple time points (when > the venn-diagram is more relevant) > > Any ideas what is going on?
limmaGUI is a Bioconductor package; ask on the Bioconductor mailing list. http://bioconductor.org/docs/mailList.html don't forget to consult packageDescription() and include the maintainer (who is in the best position to help). Martin > > Thanks > > Danny > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.