Nair, Murlidharan T wrote:
I am getting the following errors when I am trying to plot the data below. I
cannot figure out the error.
Error in plot.window(...) : need finite 'xlim' values
In addition: Warning messages:
1: In min(x) : no non-missing arguments to min; returning Inf
2: In max(x) : no non-missing arguments to max; returning -Inf
3: In min(x) : no non-missing arguments to min; returning Inf
4: In max(x) : no non-missing arguments to max; returning -Inf
#I am using the following code
#======================================================
library(multcomp)
sig.data<-structure(list(X = 1:10, Cell.lines = structure(c(2L, 5L, 8L,
9L, 3L, 6L, 10L, 1L, 4L, 7L), .Label = c("T(70%)a-N(0%)c", "T(70%)a-N(0%)f",
"T(70%)a-N(0%)i", "T(70%)c-N(0%)c", "T(70%)c-N(0%)f", "T(70%)c-N(0%)i",
"T(80%)a-N(0%)c", "T(80%)a-N(0%)f", "T(90%)-N(0%)f", "T(90%)-N(0%)i"
), class = "factor"), estimate = c(9859.74333, -5553.64802, 6227.17947,
8063.6472, 6548.86032, -8864.53103, 4752.7642, 9057.72021, -6355.67115,
5425.15635), lower = c(5560.57875, -9852.8126, 1928.01489, 3764.48262,
2249.69575, -13163.69561, 453.59962, 4758.55563, -10654.83573,
1125.99177), upper = c(14158.90791, -1254.48344, 10526.34405,
12362.81178, 10848.0249, -4565.36645, 9051.92877, 13356.88479,
-2056.50657, 9724.32092), p.val.raw = c(1.15e-08, 5.78e-05, 1.36e-05,
3.21e-07, 6.91e-06, 6.97e-08, 0.000331, 4.87e-08, 1.04e-05, 7.63e-05
), p.val.bon = c(2.66e-06, 0.0133, 0.00315, 7.41e-05, 0.0016,
1.61e-05, 0.0764, 1.13e-05, 0.0024, 0.0176), p.val.adj = c(2.65e-13,
0.000592, 2.82e-05, 9.72e-08, 6.56e-05, 8.76e-09, 0.0117, 6.22e-09,
6.44e-06, 0.000334)), .Names = c("X", "Cell.lines", "estimate",
"lower", "upper", "p.val.raw", "p.val.bon", "p.val.adj"), class = "data.frame", row.names = c("T(70%)a-N(0%)f",
"T(70%)c-N(0%)f", "T(80%)a-N(0%)f", "T(90%)-N(0%)f", "T(70%)a-N(0%)i",
"T(70%)c-N(0%)i", "T(90%)-N(0%)i", "T(70%)a-N(0%)c", "T(70%)c-N(0%)c",
"T(80%)a-N(0%)c"))
rownames(sig.data)<-sig.data[,2]
my.hmtest <- structure(list(
estimate = t(t(structure(sig.data[,"estimate"], .Names =
rownames(sig.data)))),
conf.int = sig.data[,4:5],
ctype = "ABCC4-2007"),
class = "hmtest")
par(mex=0.5) #This helps to accomodate the margins when text is getting cut off
plot(my.hmtest, cex.axis=0.7)
There is not method plot.hmtest defined anywhere. Hence plot.default is
used and that one does not know hoe to handle an object like the one you
just defined.
Uwe Ligges
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______________________________________________
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
