Thank you very much!
Eleni
On Fri, Dec 11, 2009 at 7:19 PM, Steve Lianoglou <
mailinglist.honey...@gmail.com> wrote:
> Hi Eleni,
>
> On Dec 11, 2009, at 12:04 PM, Eleni Christodoulou wrote:
>
> > Dear R users,
> >
> > I am trying to apply SVM regression for a set of microarray data. I am
> using
> > the function svm() under the package {e1071}. Can anyone tell me what
> > the *residuals
> > *value represents? I have some observed values *y_obs* for the parameter
> > that I want to estimate and I would expect that *svm$residuals = y_obs -
> > svm$fitted.
> > *However, this does not happen...Does anyone have any idea on that?
>
> This actually is what's happening. The $residuals that are reported in the
> model are against your *scaled* y-vector.
>
> So, with your data:
>
> R> m <- svm(x,y)
> R> all(scale(y) - predict(m,x) == m$residuals)
> [1] TRUE
>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
> | Memorial Sloan-Kettering Cancer Center
> | Weill Medical College of Cornell University
> Contact Info:
> http://cbio.mskcc.org/~lianos/contact<http://cbio.mskcc.org/%7Elianos/contact>
>
>
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