>  The caret package is so good, I am learning it, but one problem is that 
> nearZeroVar function can be used to identify near zero–variance variables and 
> it only identify, how can I remove those variables that were identify, 
> because I have many zero- or near zero- ones, it is not realistic to removel 
> it by hand, can this function can identify and removel those ones 
> automatically?
>

newx <- x[, -nearZeroVar(x), drop = FALSE]

should do it

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