Thank you very much Duncan! Adding the line \usepackage{Sweave} fixed the
problem.
Best wishes
Kristian
_____
Dr Kristian Unger
Bioinformaticist Chernobyl Tissue Bank
Division of Surgery and Cancer
Imperial College London
Rm G02, Ground floor G Block
Hammersmith Hospital
Du Cane Road,
London W12 0HS
Tel +44-20-8383-2443
Mob +44-795-1080619
Skype kristianunger
http://www1.imperial.ac.uk/medicine/about/divisions/is/histo/
http://www.chernobyltissuebank.com
-----Original Message-----
From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
Sent: 11 February 2010 12:06
To: Unger, Kristian
Cc: 'r-help@r-project.org'
Subject: Re: [R] Sweve/cacheSweave
On 11/02/2010 6:06 AM, Duncan Murdoch wrote:
> Unger, Kristian wrote:
>> Hi there
>>
>> I have a problem with using Sweave in combination with the option driver =
>> cacheSweave.
>>
>> Whichever code I try to run - when it comes to converting the tex file into
>> pdf it comes up with the same errors (\csname \endcsname errors). Does
>> anybody have an idea what it going wrong?
>>
>>
>>> Sweave("pgfSweave-example.Rnw",driver = cacheSweaveDriver)
>>>
>> Writing to file pgfSweave-example.tex
>> Processing code chunks ...
>> 1 : term verbatim (label=setup)
>> 2 : echo term verbatim (label=data)
>> 3 : term verbatim eps pdf (label=boxplot)
>>
>> You can now run LaTeX on 'pgfSweave-example.tex'
>>
>>
>>> tools::texi2dvi("pgfSweave-example.tex", pdf=TRUE)
>>>
>> Error in tools::texi2dvi("pgfSweave-example.tex", pdf = TRUE) :
>> running 'texi2dvi' on 'pgfSweave-example.tex' failed
>>
>> LaTeX errors:
>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10:
>> Missing
>> \endcsname inserted
>> The control sequence marked <to be read again> should
>> not appear between \csname and \endcsname.
>>
>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10:
>> LaTeX E
>> rror: Missing \begin{document}.
>>
>
> I think this is the important error: it looks as though your .tex file
> isn't a complete LaTeX document. The other errors likely follow from this.
From an offline followup: the .tex was complete, but it included a
path to Sweave.sty that contained TeX-special characters, and that was
the source of the error. See ?RweaveLatex for a discussion of how to
avoid this.
Duncan Murdoch
>
> Duncan Murdoch
>> See the LaTeX manual or LaTeX Companion for explanation.
>> Type H <return> for immediate help
>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10:
>> Extra \
>> endcsname
>> I'm ignoring this, since I wasn't doing a \csname.
>>
>>
>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10:
>> Missing
>> \endcsname inserted
>> The control sequence marked <to be read again> should
>> not appear between \csname and \endcsname.
>>
>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10:
>> Extra \
>> endcsname
>> I'm ignoring this, since I wasn't doing a \csname.
>>
>> I am running this under Windows XP, R version 2.9.2 (2009-08-24), >
>> package.version("cacheSweave")
>> [1] "0.4-3".
>>
>> Any help or advice on this would be highly appreciated!
>>
>> Best wishes
>>
>> Kristian
>>
>> _____
>>
>> Dr Kristian Unger
>>
>> Bioinformaticist Chernobyl Tissue Bank
>>
>> Division of Surgery and Cancer
>>
>> Imperial College London
>>
>> Rm G02, Ground floor G Block
>> Hammersmith Hospital
>> Du Cane Road,
>> London W12 0HS
>>
>> Tel +44-20-8383-2443
>>
>> Mob +44-795-1080619
>>
>> Skype kristianunger
>>
>> http://www1.imperial.ac.uk/medicine/about/divisions/is/histo/
>> http://www.chernobyltissuebank.com
>>
>>
>> [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
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and provide commented, minimal, self-contained, reproducible code.
