Hi all, I already posted this to seqinr-fo...@lists.r-forge.r-project.org but since (so far) no reply was given, I decided to try my luck in this list too.
Dear list. I wish (for my thesis work), to import tRNA data into R and have it aligned. My questions are: 1) What resources can I use for the data. 2) What commands might help me with the import/alignment. So far, I found two nice repositories that holds such data: 1) <http://trnadb.bioinf.uni-leipzig.de/Result> http://trnadb.bioinf.uni-leipzig.de/Result 2) <http://gtrnadb.ucsc.edu/download.html> http://gtrnadb.ucsc.edu/download.html And also the readFASTA command from Biostrings, that does basic importing of the data into R. My problem still remains with *how to handle the alignment* of the tRNA. Since I am not from the field, I might be missing a very basic answer (like where I should download the data from, what command to use or even where to ask). If you might be willing to advice me, that would be most helpful. Many thanks in advance, Tal ----------------Contact Details:------------------------------------------------------- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English) ---------------------------------------------------------------------------------------------- [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
