sorry, it was read, indeed. TIA
Leonardo K. Shikida Vetta Labs +55(31)2551-6936 ext 203 http://www.vettalabs.com On Thu, Apr 8, 2010 at 3:43 PM, David Winsemius <dwinsem...@comcast.net> wrote: > > On Apr 8, 2010, at 2:14 PM, Leonardo K. Shikida wrote: > >> Hi >> >> I am trying this >> >>> x <- read.table("/home/kenji/1245/GDS1_2grps_.cls", header = F, skip = 2) >>> x <- read.table("/home/kenji/1246/MYCset.cls", header = F, skip = 2) >> >> Warning message: >> In read.table("/home/kenji/1246/MYCset.cls", header = F, skip = 2) : >> incomplete final line found by readTableHeader on >> '/home/kenji/1246/MYCset.cls' >> >> Here are the hex's >> >> ke...@yule:~$ hd 1245/GDS1_2grps_.cls >> 00000000 31 32 20 32 20 31 0a 23 20 43 44 31 39 2b 20 43 |12 2 1.# >> CD19+ C| >> 00000010 44 34 30 4c 0a 30 20 30 20 30 20 30 20 30 20 30 |D40L.0 0 0 0 >> 0 0| >> 00000020 20 31 20 31 20 31 20 31 20 31 20 31 0a | 1 1 1 1 1 >> 1.| >> 0000002d >> ke...@yule:~$ hd 1246/ >> job938_MYC_RMA.gct MYCset.cls .MYCset.cls.swp >> ke...@yule:~$ hd 1246/MYCset.cls >> 00000000 31 32 20 32 20 31 0a 23 20 4d 59 43 20 4e 6f 74 |12 2 1.# MYC >> Not| >> 00000010 0a 30 20 30 20 30 20 30 20 30 20 30 20 31 20 31 |.0 0 0 0 0 0 >> 1 1| >> 00000020 20 31 20 31 20 31 20 31 | 1 1 1 1| >> 00000028 >> >> So it seems the problem is the linefeed (0a) absent in the second >> file, probably generated by some evil excel or something like this. >> >> My question is: is there any simple way to make read.table robust to >> deal with this problem? I would like to avoid solutions such as >> re-implement using scan or asking the user to deal with this for me, >> changing himself the file. > > Did the line get read? > > (I have failed in my efforts on a Mac to create a file with a text editor > that throws that warning.) In a sense it appears to already be "robust" , > since it only generated a warning, rather than an error. If you want to > programmatically turn off warnings, then: > > ?warnings > ?options # with a bunch of settings for warn > > Perhaps inside your function you could call set warn = -1 the restore to =0 > before exit. > > options(warn=-1) > read.table( ... ) > options(warn=0) >> >> Thanks in advance >> >> Leonardo K. Shikida >> Vetta Labs >> +55(31)2551-6936 ext 203 >> http://www.vettalabs.com >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > David Winsemius, MD > West Hartford, CT > > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.