Thanks you all for the contributions!
I will send the data back to the computer guys who collect data yesterday.
Actually, the data can be open in excel and txt editor. after replace some
";",
> gene_name<-read.table("/home/cdu/operon/id_name_gh5.txt", sep="\t",
skip=0, header=FALSE, fill=TRUE)
> dim(gene_name)
[1] 1205 3
It is now 1205 lines. It needs to be cleaned. Thanks so much for the great
help and input, I am afraid I use much of your time.
Thanks!
On Tue, May 25, 2010 at 9:27 AM, David Winsemius <dwinsem...@comcast.net>wrote:
> Have you compared them to
>
> tail(gene)_name, 2)
>
> Come on, man, show some initiative.
>
> On May 25, 2010, at 12:12 PM, Changbin Du wrote:
>
> 644727344 ABC-2 type transporter ABC-2 type transporter
> 644727345 conserved hypothetical protein conserved hypothetical
> protein
>
> Here is the last two lines of the file id_name_gh5.txt.
>
>
>
> On Tue, May 25, 2010 at 8:57 AM, David Winsemius
> <dwinsem...@comcast.net>wrote:
>
>>
>> On May 25, 2010, at 11:42 AM, Changbin Du wrote:
>>
>> HI, Dear R community,
>>>
>>> My original file has 1932 lines, but when I read into R, it changed to
>>> 1068
>>> lines, how comes?
>>>
>>
>> We are being asked to investigate this quest, how?
>>
>> Have you looked at the last line to see if it looks like gene_name?
>>
>> Isn't this isomorphic to genetics questions? What sort of mutation is it?
>> Deletion? Abnormal stop codon? Figure out where the transcription process
>> went wrong. This sort of analysis would appear to be right up the alley of
>> someone doing genetics.
>>
>>
>>
>>>
>>> c...@nuuk:~/operon$ wc -l id_name_gh5.txt
>>> 1932 id_name_gh5.txt
>>>
>>>
>>> gene_name<-read.table("/home/cdu/operon/id_name_gh5.txt", sep="\t",
>>>>
>>> skip=0, header=F, fill=T)
>>>
>>>> dim(gene_name)
>>>>
>>> [1] 1068 3
>>>
>>>
>>> --
>>>
>>
>>
>> David Winsemius, MD
>> West Hartford, CT
>>
>>
>
>
> --
> Sincerely,
> Changbin
> --
>
>
>
>
> David Winsemius, MD
> West Hartford, CT
>
>
--
Sincerely,
Changbin
--
Changbin Du
DOE Joint Genome Institute
Bldg 400 Rm 457
2800 Mitchell Dr
Walnut Creet, CA 94598
Phone: 925-927-2856
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