On 31 May 2010, at 13:03, <mau...@alice.it> <mau...@alice.it> wrote:
I recently updated R 2.10.1 Patched (2010-02-20 r51163)
This morning I reinstalled biomaRt using biocLite.
Now I can no more connect to biomaRt and even the following
instruction is hanging for a while until
the same error message pops up.
listMarts()
Error in value[[3L]](cond) :
Request to BioMart web service failed. Verify if you are still
connected to the internet. Alternatively the BioMart web service
is temporarily down.
Did you check this as suggested in the error message? Currently, when
I try http://www.biomart.org/ it doesn't seem to work.
Regards
\Heidi
I checked my command syntax and got the following message:
library(help=biomaRt)
Warning messages:
1: package 'JavaGD' was built under R version 2.9.0 and help may
not work correctly
2: package 'Biobase' was built under R version 2.9.0 and help may
not work correctly
3: package 'Biostrings' was built under R version 2.9.0 and help
may not work correctly
4: package 'IRanges' was built under R version 2.9.0 and help may
not work correctly
5: package 'CORNA' was built under R version 2.9.0 and help may not
work correctly
6: package 'GEOquery' was built under R version 2.9.0 and help may
not work correctly
7: package 'microRNA' was built under R version 2.9.0 and help may
not work correctly
8: package 'Rlibstree' was built under R version 2.9.0 and help may
not work correctly
I am stuck.
Which packages am I supposed to install again ? Maybe shall I get
rid of R 2.10.1 Patched
and restart from scratch ?
Thank you in advance.
Maura
tutti i telefonini TIM!
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