Dear R helpers, I have a curious problem, which is that a program I have written in R crashes R, unpredictably. When I say that the program crashes R, I mean that it causes R to terminate, completely. But, the operating system (Windows) continues OK.
The program loops around a randomForest regression. I am trying to use randomForest to predict the diagnosis for a set of patients with dementia. I have 140 patients, of whom 125 have one kind of dementia and 15 have a different kind. We have measured about 50 variables for each patient. The program repeatedly and randomly splits the 150 patients into 75:25 groupings. Then it 'trains' the randomForest using the 75% grouping, then it 'predicts' the remaining 25% of cases. I save the predictions and at the end compute a Receiver Operating Characteristic curve. The program will work away happily for hours and will sometimes perform as many as 100 cycles around the above loop. It gives quite nice results. But, quite frequently, and unpredictably, it fails and R just stops. As I say, the operating system continues and any other programs that are multi- tasking are unaffected. If anyone could give me an idea on how to avoid this problem, I'd be grateful. Thanks, Jonathan Williams Jonathan Williams OPTIMA Radcliffe Infirmary Woodstock Road OXFORD OX2 6HE Tel +1865 (2)24356 ______________________________________________ [EMAIL PROTECTED] mailing list http://www.stat.math.ethz.ch/mailman/listinfo/r-help
