Begin forwarded message:
From: Dan Kelley <[EMAIL PROTECTED]>
Date: March 19, 2004 12:00:01 PM AST
To: Don MacQueen <[EMAIL PROTECTED]>
Subject: Re: [R] osx/fink: cannot do "R INSTALL" (library mixup)
That works perfectly! THanks. I did
524 export PKG_LIBS="-L/usr/local/lib -L/sw/lib"
525 R INSTALL pspline
and all is fine. Cheers!
On Mar 19, 2004, at 11:51 AM, Don MacQueen wrote:
Did you install the so-called "Developer Tools"? Or perhaps it's more
correctly called "XTools" in 10.3 (Panther).
You may have learned about this already, but perhaps not since you
just switched. A default OS X installation does not include all of
the resources needed for code development. I've kind of lost track of
the exact details of what's included in a default installation and
what's not; I find it easier just to install everything.
Note that on my system (which is still 10.2.8):
[161]% locate frtbegin
/usr/local/lib/libfrtbegin.a
As I understand it, the folks who maintain RAqua binaries for OS X
tend to not want to use fink, so they suggest getting additional
resources from other sources. Evidently I did that.
The R documentation is pretty good about installation options. Here
are a few pointers.
R INSTALL --help
You can set env vars before running R INSTALL, for example:
setenv PKG_CPPFLAGS "-I/usr/local/mysql/include"
setenv PKG_LIBS "-L/usr/local/mysql/lib -lmysqlclient"
(csh syntax)
-Don
Hello friends. I've just switched from linux to osx, and I'm liking
it, except now that I'm getting down to brass tacks, and needing to
install some R packages, I'm at a roadblock. I'm hoping someone can
help.
My R is installed from a .dmg, and resides as follows:
$ which R
/usr/local/bin/R
The problem is that I cannot build packages. For example, see the
below (which also indicates that libfrtbegin.a is in the
/sw
directory, i.e. that it was installed by the FINK setup). Does
anybody know how I can solve this problem, e.g. how to alter the
-L(directory)
commands that are employed?
(Aside: I looked for a solution on the R archives. Also, I've tried
to make my subject-line clear enough that an answer will benefit
other osx/fink users. Thanks!!)
$ R INSTALL pspline
* Installing *source* package 'pspline' ...
** libs
gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o
pspline.so Pspline.o -L/usr/local/lib
-L/usr/local/lib/gcc/powerpc- apple-darwin6.6/3.4
-L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4/../../.. -lfrtbegin
-lg2c -lSystem -lcc_dynamic
ld: warning -L: directory name
(/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4) does not exist
ld: warning -L: directory name
(/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4/../../..) does not
exist
ld: can't locate file for: -lfrtbegin
make: *** [pspline.so] Error 1
ERROR: compilation failed for package 'pspline'
** Removing '/Applications/StartR.app/RAqua.app/Contents/pspline'
$ locate frtbegin
/sw/lib/libfrtbegin.a
Dan E. Kelley, Associate Professor phone:(902)494-1694
Oceanography Department, Dalhousie University fax:(902)494-2885
Halifax, Nova Scotia mailto:[EMAIL PROTECTED]
Canada B3H 4J1 http://www.phys.ocean.dal.ca/~kelley/Kelley_Dan.html
______________________________________________
[EMAIL PROTECTED] mailing list
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PLEASE do read the posting guide!
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--
--------------------------------------
Don MacQueen
Environmental Protection Department
Lawrence Livermore National Laboratory
Livermore, CA, USA
--------------------------------------
Dan E. Kelley, Associate Professor phone:(902)494-1694
Oceanography Department, Dalhousie University fax:(902)494-2885
Halifax, Nova Scotia mailto:[EMAIL PROTECTED]
Canada B3H 4J1 http://www.phys.ocean.dal.ca/~kelley/Kelley_Dan.html
Dan E. Kelley, Associate Professor phone:(902)494-1694
Oceanography Department, Dalhousie University fax:(902)494-2885
Halifax, Nova Scotia mailto:[EMAIL PROTECTED]
Canada B3H 4J1 http://www.phys.ocean.dal.ca/~kelley/Kelley_Dan.html
______________________________________________
[EMAIL PROTECTED] mailing list
https://www.stat.math.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
