Sigal Blay wrote:
gregmisc is installed yet the problem persist.
I installed gregmisc using
install.packages(c("combinat","gregmisc","genetics"),lib='/home/sblay/lib')
(on the same library path where I am trying to install LDheatmap)
Have you set the environment variable R_LIBS appropriately?
Uwe Ligges
installed.packages(lib='/home/sblay/lib')
Package LibPath Version Priority Bundle
combinat "combinat" "/home/sblay/lib" "0.0-5" NA NA
gdata "gdata" "/home/sblay/lib" "2.0.0" NA "gregmisc"
genetics "genetics" "/home/sblay/lib" "1.1.1" NA NA
gmodels "gmodels" "/home/sblay/lib" "2.0.0" NA "gregmisc"
gplots "gplots" "/home/sblay/lib" "2.0.0" NA "gregmisc"
gtools "gtools" "/home/sblay/lib" "2.0.0" NA "gregmisc"
LDheatmap "LDheatmap" "/home/sblay/lib" "1.0" NA NA
...
I am developing a package named LDehatmap.
It depends on the "genetics" package
and includes two data files and a demo file.
When I'm trying to install it, I get the following messages:
* Installing *source* package 'LDheatmap' ...
** R
** data
** demo
** help
Building/Updating help pages for package 'LDheatmap'
Formats: text html latex example
LDheatmap text html latex example
ldheatmap text html latex example
Error: object 'reorder' not found whilst loading namespace 'gdata'
Error: package 'gdata' could not be loaded
Execution halted
ERROR: installing package indices failed
Any ideas?
Yes. You do not have gdata (part of gregmisc) installed, and genetics
depends on it. How did you get genetics installed? A binary install?
Install gregmisc ....
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