One suggestion: After you break the check process, look at the file
C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R
and try to see if you can run that in batch mode.
You can also look into GeneticsPed-Ex.Rout that tells you where the stuff hangs.
Uwe
Andy
From: Gorjanc Gregor
Hello!
I am building a package, which includes also one Fortran subroutine, which works fine if I compile it as a shared library and load it into
R via dyn.load(). However, when I launch R CMD check it doesn't stop with checking examples. It's just doing and doing ... I pasted the
whole output from R CMD check. Does anyone have any suggestions?
I'm still using R 2.0.1.
C:\Gregor\devel\GeneticsPed>Rcmd check GeneticsPed * checking for working latex ... OK * using log directory 'C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck' * checking for file 'GeneticsPed/DESCRIPTION' ... OK * checking if this is a source package ... OK
installing R.css in C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck
---------- Making package GeneticsPed ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
g77 -O2 -Wall -c meuwissen.f -o meuwissen.o
ar cr GeneticsPed.a meuwissen.o
ranlib GeneticsPed.a
gcc --shared -s -o GeneticsPed.dll GeneticsPed.def GeneticsPed.a GeneticsPed_r
es.o -Lc:/Programs/R/rw2001/src/gnuwin32 -lg2c -lR
... DLL made
installing DLL
installing R files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'GeneticsPed'
Formats: text html latex example chm
NAtoUnknown text html latex example
code.pedigree text html latex example
extend.pedigree text html latex example
generate.pedigree text html latex example
generation text html latex example
getcode.pedigree text html latex example
inbreeding text html latex example chm
is.unknown text html latex example
kinship text html latex example chm
pedigree text html latex example chm
missing link(s): ?pedigree in kinship?
prop.pedigree text html latex example
relationshipAdditive text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm
Compile time: 0 minutes, 0 seconds 13 Topics 41 Local links 0 Internet links 1 Graphic
Created c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm, 32,327 byte
s
Compression decreased file by 10,172 bytes.
adding MD5 sums
* DONE (GeneticsPed)
* checking package directory ... OK * checking for portable file names ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C sources/headers ... OK * creating GeneticsPed-Ex.R ... OK * checking examples ...
-- Lep pozdrav / With regards, Gregor Gorjanc
-------------------------------------------------------------- ---------- University of Ljubljana Biotechnical Faculty URI: http://www.bfro.uni-lj.si/MR/ggorjan Zootechnical Department email: gregor.gorjanc <at> bfro.uni-lj.si Groblje 3 tel: +386 (0)1 72 17 861 SI-1230 Domzale fax: +386 (0)1 72 17 888 Slovenia
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