Helmut Kudrnovsky wrote:
Hello R-friends,
i have a question to the "text"-function.
a little test-dataset for better understanding:
-the dataset was imported with read.table(....,header=TRUE)
s1-s10 are the samplenames
var1 var2 var3
s1 1 1 2
s2 2 3 1
s3 2 2 3
s4 5 4 3
s5 4 2 3
s6 6 3 2
s7 8 5 4
s8 7 2 1
s9 9 3 2
s10 8 6 4
-then i´ve performed a pincipal component analysis with prcomp
-for displaying the result in a x,y-graph i transformed out.pca$x into
the dataframe points
points <- out.pca$x
> points
PC1 PC2 PC3
s1 -4.7055777 -0.14781544 -0.3683602
s2 -3.1854599 0.19661476 1.5212455
s3 -3.2687980 0.78193513 -0.6352458
s4 0.2278948 1.00061498 0.2164108
s5 -1.4382847 0.02500633 -0.9114340
s6 0.6216283 -0.68606440 0.2071083
s7 3.4951878 1.17343675 -0.3266629
s8 1.0153619 -2.37274378 0.1978058
s9 3.3673983 -1.82145761 -0.2071739
s10 3.8706492 1.85047328 0.3063065
- with plot(points$PC1, points$PC2, type="n") i start a graph without
displaying anything at the x,y-coordinates
I think points should be a matrix rather than a list or data.frame,
hence the code above won't work. Instead:
plot(points[,"PC1"], points[,"PC2"], type="n")
- i want now to display the samplenames at the right x,y-coordinate; i
generated a dataframe called lab with the samplenames
> lab
V1
1 s1
2 s2
3 s3
4 s4
5 s5
6 s6
7 s7
8 s8
9 s9
10 s10
- i´ve studied the "text"-helppage and so i tried the following:
text(pca$PC1, pca$PC2, labels=lab)
Hmm, what is pca ???
lab <- rownames(points)
text(points[,"PC1"], points[,"PC2"], labels=lab)
works for me.
- in the plot there is now c(1,3,4,5,6,7,8,9,10,2) displayed instead of
s1-s10
Quite probably you lab was a *factor* ...
is out there any idea what i'am doing wrong? is there maybe another way
of displaying the samplenames at the right x,y-coordinate?
We cannot say what you did wrong when constructing your plot, but we
know that your descibtion above is wrong, because it does not even work
to generate the empty plot the way ...
Please read the posting guide and rethink at least one time whether the
code you are giving us is reproducible. Your code was not.
Uwe Ligges
greetings from the sunny tirol with thanks in advance
helli
platform i386-pc-mingw32
arch i386
os mingw32 - win xp
system i386, mingw32
status
major 2
minor 1.0
year 2005
month 04
day 18
language R
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