Hi there,
I was updating the R-cmdr add-on (v.1.1-6 to the latest v.1.2) for R
(v.2.2.0) in a SunOS9 environment and came across some warnings during my
installation - it seems to download the dependencies but runs into the
following during install:
* Installing *source* package 'acepack' ...
** libs
/opt/sfw/R/R-2.2.0/bin/SHLIB: make: not found
ERROR: compilation failed for package 'acepack'
/opt/sfw/R/R-2.2.0/bin/INSTALL: test: argument expected
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
I don't see why I would have to remove the 00LOCK file since it seems to
have been created by the very session of R I use to run install.packages().
I'm attaching the complete log.
Any insight or feedback will be much appreciated.
Thank you,
Sarosh Jamal
Geo Computing & IT Specialist, Department of Geography
University of Toronto at Mississauga
e: [EMAIL PROTECTED]
# ls
BATCH config libtool R Rdconv Sd2Rd
build exec LINK Rcmd Rdiff SHLIB
check f77 mkinstalldirs Rd2dvi REMOVE
texi2dvi
COMPILE INSTALL pager Rd2txt Rprof
# ./R
R : Copyright 2005, The R Foundation for Statistical Computing
Version 2.2.0 (2005-10-06 r35749)
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
> install.packages("Rcmdr",dependencies=TRUE)
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
dependency ''zoo'' is not available
also installing the dependencies 'acepack', 'chron', 'Hmisc', 'scatterplot3d',
'quadprog', 'mlbench', 'randomForest', 'SparseM', 'xtable', 'its', 'systemfit',
'sem', 'e1071', 'tseries', 'Ecdat', 'mvtnorm', 'leaps', 'strucchange',
'sandwich', 'dynlm', 'abind', 'car', 'effects', 'lmtest', 'multcomp', 'relimp',
'RODBC'
trying URL 'http://probability.ca/cran/src/contrib/acepack_1.3-2.2.tar.gz'
Content type 'application/x-tar' length 18596 bytes
opened URL
==================================================
downloaded 18Kb
trying URL 'http://probability.ca/cran/src/contrib/chron_2.3-7.tar.gz'
Content type 'application/x-tar' length 29647 bytes
opened URL
==================================================
downloaded 28Kb
trying URL 'http://probability.ca/cran/src/contrib/Hmisc_3.0-12.tar.gz'
Content type 'application/x-tar' length 467466 bytes
opened URL
==================================================
downloaded 456Kb
trying URL 'http://probability.ca/cran/src/contrib/scatterplot3d_0.3-24.tar.gz'
Content type 'application/x-tar' length 504314 bytes
opened URL
==================================================
downloaded 492Kb
trying URL 'http://probability.ca/cran/src/contrib/quadprog_1.4-9.tar.gz'
Content type 'application/x-tar' length 11176 bytes
opened URL
==================================================
downloaded 10Kb
trying URL 'http://probability.ca/cran/src/contrib/mlbench_1.1-1.tar.gz'
Content type 'application/x-tar' length 1179218 bytes
opened URL
==================================================
downloaded 1151Kb
trying URL 'http://probability.ca/cran/src/contrib/randomForest_4.5-16.tar.gz'
Content type 'application/x-tar' length 82484 bytes
opened URL
==================================================
downloaded 80Kb
trying URL 'http://probability.ca/cran/src/contrib/SparseM_0.71.tar.gz'
Content type 'application/x-tar' length 537933 bytes
opened URL
==================================================
downloaded 525Kb
trying URL 'http://probability.ca/cran/src/contrib/xtable_1.3-2.tar.gz'
Content type 'application/x-tar' length 12475 bytes
opened URL
==================================================
downloaded 12Kb
trying URL 'http://probability.ca/cran/src/contrib/its_1.1.4.tar.gz'
Content type 'application/x-tar' length 33729 bytes
opened URL
==================================================
downloaded 32Kb
trying URL 'http://probability.ca/cran/src/contrib/systemfit_0.8-0.tar.gz'
Content type 'application/x-tar' length 431667 bytes
opened URL
==================================================
downloaded 421Kb
trying URL 'http://probability.ca/cran/src/contrib/sem_0.9-5.tar.gz'
Content type 'application/x-tar' length 45046 bytes
opened URL
==================================================
downloaded 43Kb
trying URL 'http://probability.ca/cran/src/contrib/e1071_1.5-13.tar.gz'
Content type 'application/x-tar' length 332528 bytes
opened URL
==================================================
downloaded 324Kb
trying URL 'http://probability.ca/cran/src/contrib/tseries_0.10-6.tar.gz'
Content type 'application/x-tar' length 188637 bytes
opened URL
==================================================
downloaded 184Kb
trying URL 'http://probability.ca/cran/src/contrib/Ecdat_0.1-4.tar.gz'
Content type 'application/x-tar' length 4352146 bytes
opened URL
==================================================
downloaded 4250Kb
trying URL 'http://probability.ca/cran/src/contrib/mvtnorm_0.7-5.tar.gz'
Content type 'application/x-tar' length 165654 bytes
opened URL
==================================================
downloaded 161Kb
trying URL 'http://probability.ca/cran/src/contrib/leaps_2.7.tar.gz'
Content type 'application/x-tar' length 24777 bytes
opened URL
==================================================
downloaded 24Kb
trying URL 'http://probability.ca/cran/src/contrib/strucchange_1.3-0.tar.gz'
Content type 'application/x-tar' length 561247 bytes
opened URL
==================================================
downloaded 548Kb
trying URL 'http://probability.ca/cran/src/contrib/sandwich_2.0-0.tar.gz'
Content type 'application/x-tar' length 609695 bytes
opened URL
==================================================
downloaded 595Kb
trying URL 'http://probability.ca/cran/src/contrib/dynlm_0.1-2.tar.gz'
Content type 'application/x-tar' length 17243 bytes
opened URL
==================================================
downloaded 16Kb
trying URL 'http://probability.ca/cran/src/contrib/abind_1.1-0.tar.gz'
Content type 'application/x-tar' length 10280 bytes
opened URL
==================================================
downloaded 10Kb
trying URL 'http://probability.ca/cran/src/contrib/car_1.1-1.tar.gz'
Content type 'application/x-tar' length 201383 bytes
opened URL
==================================================
downloaded 196Kb
trying URL 'http://probability.ca/cran/src/contrib/effects_1.0-9.tar.gz'
Content type 'application/x-tar' length 56186 bytes
opened URL
==================================================
downloaded 54Kb
trying URL 'http://probability.ca/cran/src/contrib/lmtest_0.9-18.tar.gz'
Content type 'application/x-tar' length 191251 bytes
opened URL
==================================================
downloaded 186Kb
trying URL 'http://probability.ca/cran/src/contrib/multcomp_0.4-8.tar.gz'
Content type 'application/x-tar' length 195368 bytes
opened URL
==================================================
downloaded 190Kb
trying URL 'http://probability.ca/cran/src/contrib/relimp_0.9-7.tar.gz'
Content type 'application/x-tar' length 12072 bytes
opened URL
==================================================
downloaded 11Kb
trying URL 'http://probability.ca/cran/src/contrib/RODBC_1.1-7.tar.gz'
Content type 'application/x-tar' length 79624 bytes
opened URL
==================================================
downloaded 77Kb
trying URL 'http://probability.ca/cran/src/contrib/Rcmdr_1.2-0.tar.gz'
Content type 'application/x-tar' length 965878 bytes
opened URL
==================================================
downloaded 943Kb
* Installing *source* package 'acepack' ...
** libs
/opt/sfw/R/R-2.2.0/bin/SHLIB: make: not found
ERROR: compilation failed for package 'acepack'
/opt/sfw/R/R-2.2.0/bin/INSTALL: test: argument expected
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
ERROR: failed to lock directory '/opt/sfw/R/R-2.2.0/library' for modifying
Try removing '/opt/sfw/R/R-2.2.0/library/00LOCK'
The downloaded packages are in
/tmp/Rtmp22145/downloaded_packages
There were 28 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: installation of package 'acepack' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
2: installation of package 'chron' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
3: installation of package 'Hmisc' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
4: installation of package 'scatterplot3d' had non-zero exit status in:
install.packages("Rcmdr", dependencies = T
RUE)
5: installation of package 'quadprog' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
6: installation of package 'mlbench' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
7: installation of package 'randomForest' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TR
UE)
8: installation of package 'SparseM' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
9: installation of package 'xtable' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
10: installation of package 'systemfit' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE
)
11: installation of package 'sem' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
12: installation of package 'e1071' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
13: installation of package 'Ecdat' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
14: installation of package 'mvtnorm' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
15: installation of package 'leaps' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
16: installation of package 'sandwich' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
17: installation of package 'dynlm' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
18: installation of package 'abind' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
19: installation of package 'car' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
20: installation of package 'effects' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
21: installation of package 'lmtest' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
22: installation of package 'relimp' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
23: installation of package 'RODBC' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
24: installation of package 'Rcmdr' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
25: installation of package 'its' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
26: installation of package 'tseries' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
27: installation of package 'strucchange' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TR
UE)
28: installation of package 'multcomp' had non-zero exit status in:
install.packages("Rcmdr", dependencies = TRUE)
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