I have the following graphic where I drop unused factors in the x axis, however 
I cannot get the first point on the second panel. It seems shifted.  Any ideas?

The example is below:

data <- data.frame(
                   
Room=as.factor(c(132,132,132,132,132,132,132,132,132,196,196)),
                   
Sample=as.factor(c("A","B","C","J","K","L","M","N","O","B","C")),
                   Particulates=c(90,300,400,300,400,300,500,200,300,14,52),
                   
Class=as.factor(c(100000,100000,100000,100000,100000,100000,100000,100000,100000,10000,10000))
                   )
a <- data$Class
print(
      xyplot(Particulates~Sample|Room,
       data=data,
#       groups=Room,
       type="p",
       xlab=list(label="Sample Site",cex=3),
       ylab=list(label=expression(paste("Particles" >= "0.5 
",mu,"m/ft"^"2")),cex=3),
       ylim=c(-100,1200),
#       index.cond=list(c(2,1)),
       scales=list(x=list(relation="free", cex=2),y=list(cex=2)),
       prepanel=function(x,y,... ) {
#         yy <- y[,drop=TRUE]
         xx <- x[,drop=TRUE]
         list(xlim=levels(xx),
#              ylim=levels(yy),
              xat=sort(unique(as.numeric(xx)))
#              yat=sort(unique(as.numeric(yy)))
              )
       },
       panel=function(x,y,subscripts,m=a, ...) {
#          yy <- y[,drop=TRUE]
         panel.xyplot(x,y,...)
         panel.abline(h=m[subscripts],col="red")
         panel.abline(h=mean(y,na.rm=TRUE),col="green")
#         panel.segments(x,y,...)
       }
              )
)


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