Hi,
I am using SAM (from siggenes_1.2.11 package) method to select genes from
a microarray data set. After installing the latest R2.4.0 on my computer, to
my surprise the results are totally different from that calculated using
R2.1.1. Even the example code doesn't work the same way under these two
versions of R. Does anybody know what is going on? Thanks for any
suggestions.
library(multtest)
data(golub)
# golub.cl contains the class labels.
golub.cl
# Perform a SAM analysis for the two class unpaired case assuming
# unequal variances.
sam.out<-sam(golub,golub.cl,B=100,rand=123)
sam.out
# Obtain the Delta plots for the default set of Deltas
plot(sam.out)
Best
Wei Zhao
Postdoctoral Research Fellow
Department of Human Genetics and Biostatistics
University of California, Los Angeles
Gonda Neuroscience and Genetics Research Center
695 Charles E. Young Drive South, Box 708822
Los Angeles, CA 90095-7088, USA
Email: [EMAIL PROTECTED]
Tel:(310)8251677
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