Hi, yes but I realized afterwards that it's the logfun argument that had to be put to logfun=F and the logpriorfun function had to be log=F logpriorfun <- function(beta,shape1,shape2){ sum(dbeta(beta,shape1,shape2,log=F)) }
But that's just for that particular example. I find I am having problems still even after adjusting for that. Using other data it is not accepting the estimation of beta.start with maximum likelihood ("user.prior.density(beta.start) <= 0") and it is obliging me to specify it giving me a very narrow range, and hence the acceptance rate of the output is very mediocre (0.01)... I don't know I am missing something here maybe. As much as I was excited about the MCMCpack, I am finding that it is no substitute for BUGS/Brugs. Cody_Hamilton wrote: > > Dear Franco, > > Have you tried using the beta.start option in MCMClogit? (The problem may > be where you are starting your chain.) > > Regards, > -Cody > -- View this message in context: http://www.nabble.com/Bayesian-logistic-regression-with-a-beta-prior-%28MCMClogit%29-tf3684970.html#a10312824 Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.