Dear all, I would like to know if there is any R package that uses a sliding window approach to assess statistical significance out of my data. My data is composed of DNA sequences (of variable length) that are mapped to a genome with a determined score of alignment. So, I want to see if I can find more tags in a given region of the genome as opposed to finding them by chance. In this sliding window I would like to be able to calculate a p-value for the amount of tags found, compared to the number of tags I would expect to find by chance. P.S. If you know, please recommend other tools that I could use for graphical assessment of p-values from this sliding window approach.
Best regards João Fadista Ph.d. student UNIVERSITY OF AARHUS Faculty of Agricultural Sciences Dept. of Genetics and Biotechnology Blichers Allé 20, P.O. BOX 50 DK-8830 Tjele Phone: +45 8999 1900 Direct: +45 8999 1900 E-mail: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]> Web: www.agrsci.org <http://www.agrsci.org/> ________________________________ News and news media <http://www.agrsci.org/navigation/nyheder_og_presse> . This email may contain information that is confidential. Any use or publication of this email without written permission from Faculty of Agricultural Sciences is not allowed. If you are not the intended recipient, please notify Faculty of Agricultural Sciences immediately and delete this email. [[alternative HTML version deleted]]
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