Dear list,
I have a lot of troubles installing Rgraphviz.
I installed graphviz 2.13 from "graphviz-2.13.20061222.0540.tar"
I installed the library Rgraphviz
> getBioC("Rgraphviz")
Running biocinstall version 2.0.8 with R version 2.5.0
Your version of R requires version 2.0 of Bioconductor.
trying URL '
http://bioconductor.org/packages/2.0/bioc/src/contrib/Rgraphviz_1.14.0.tar.gz
'
Content type 'application/x-gzip' length 1522949 bytes
etc etc....
but when I do: library(Rgraphviz)
> library(Rgraphviz)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/home/jke/mazu/SOFTWARE_INST/R-2.5.0
/library/Rgraphviz/libs/Rgraphviz.so':
libgvc.so.3: cannot open shared object file: No such file or directory
Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz'
Error: package/namespace load failed for 'Rgraphviz'
The path to Rgraphviz.so is correct !
Can someone help with this?
this is the session info ....
regards
Marco
> sessioninfo()
Error: could not find function "sessioninfo"
> sessionInfo()
R version 2.5.0 (2007-04-23)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] "tools" "stats" "graphics" "grDevices" "datasets" "utils"
[7] "methods" "base"
other attached packages:
geneplotter lattice annotate Biobase graph
"1.14.0" "0.15-4" "1.14.1" "1.14.0" "1.14.2"
[[alternative HTML version deleted]]
______________________________________________
[email protected] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
