Sunitha -- I think Rmpi finds an MPICH1 installation, rather than MPICH2. Martin
"Sunithak" <[EMAIL PROTECTED]> writes: > Hello everybody, > I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the > following error: > > > * Installing *source* package 'Rmpi' ... > Try to find mpi.h ... > Found in /usr/local/mpich-1.2.7p1/include > Try to find libmpi or libmpich ... > Found libmpich in /usr/local/mpich-1.2.7p1/lib > Try to find liblam ... > checking for main in -llam... no > liblam not found. Probably not LAM-MPI > checking for openpty in -lutil... no > checking for main in -lpthread... no > configure: creating ./config.status > config.status: creating src/Makevars > ** libs > gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME > =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D > PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc > al/include -fpic -g -O2 -std=gnu99 -c conversion.c -o conversion.o > gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME > =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D > PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc > al/include -fpic -g -O2 -std=gnu99 -c internal.c -o internal.o > gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME > =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D > PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc > al/include -fpic -g -O2 -std=gnu99 -c RegQuery.c -o RegQuery.o > gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME > =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D > PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc > al/include -fpic -g -O2 -std=gnu99 -c Rmpi.c -o Rmpi.o > Rmpi.c: In function `mpi_universe_size': > Rmpi.c:84: warning: implicit declaration of function `MPI_Comm_get_attr' > Rmpi.c:84: error: `MPI_UNIVERSE_SIZE' undeclared (first use in this > function) > Rmpi.c:84: error: (Each undeclared identifier is reported only once > Rmpi.c:84: error: for each function it appears in.) > Rmpi.c: In function `mpi_comm_spawn': > Rmpi.c:873: warning: implicit declaration of function `MPI_Comm_spawn' > Rmpi.c:873: error: `MPI_ARGV_NULL' undeclared (first use in this function) > Rmpi.c: In function `mpi_comm_get_parent': > Rmpi.c:897: warning: implicit declaration of function `MPI_Comm_get_parent' > Rmpi.c: In function `mpi_comm_disconnect': > Rmpi.c:910: warning: implicit declaration of function `MPI_Comm_disconnect' > make: *** [Rmpi.o] Error 1 > chmod: cannot access `/usr/local/lib64/R/library/Rmpi/libs/*': No such file > or directory > ERROR: compilation failed for package 'Rmpi' > ** Removing '/usr/local/lib64/R/library/Rmpi' > > > can any of you please suggest as to what needs to be done? > > Thanks for your time > regards > Sunitha Manjari > Bioinformatics Team > C-DAC, Pune-411007 > Maharashtra > INDIA > > ______________________________________________ > R-help@stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Martin Morgan Bioconductor / Computational Biology http://bioconductor.org ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.