Hi all,

Most of the analyses I do are short little once-and-done type things that are 
easily encapsulated in a .Rnw file. However, I sometimes end up with projects 
that take an extended amount of time. Usually these projects are not easily 
encapsulated in an .Rnw file, so I have been using a single .R file with lots 
of comments.

The problem with this approach is keeping track of what you have done and what 
the results were. Once the .R file gets to be a certain size, the comments 
aren't as useful, and I find it easy to get lost. I have to assume that others 
have encountered this problem and hopefully have come up with something more 
elegant.

Any suggestions?

Best,

Jim


-- 

James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623



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