Thanks! I will look into ...
I have 4 GB RAM, and i was monitoring the memory with Windows task manager so i
was looking how R "gets" more and more memory allocation from less than 100Mb
to .... 1500Mb .....
My initial tables are between 30 to 80 Mb and the resulting tables that
incorporate the initial tables plus PCA and kmeans results are inbetween 50 to
200MB or thereabouts!
And yes, i don't really care about memory allocation in detail - what i want is
to free that memory after every cycle ;-)
Although, after i didn't do anything in R and it was idle for more than 30 min.
the memory allocation according to Task manager dropped to 15 Mb ..... which is
good - but i cannot wait inbetween cycles half an hour though .....
Again thanks,
Monica> Date: Fri, 10 Aug 2007 18:28:07 +0100> From: [EMAIL PROTECTED]> To:
[EMAIL PROTECTED]> CC: r-help@stat.math.ethz.ch> Subject: Re: [R] Cleaning up
the memory> > On Fri, 10 Aug 2007, Monica Pisica wrote:> > >> > Hi,> >> > I
have 4 huge tables on which i want to do a PCA analysis and a kmean > >
clustering. If i run each table individually i have no problems, but if > > i
want to run it in a for loop i exceed the memory alocation after the > > second
table, even if i save the results as a csv table and i clean up > > all the big
objects with rm command. To me it seems that even if i don't > > have the
objects anymore, the memory these objects used to occupy is not > > cleared. Is
there any way to clear up the memory as well? I don't want > > to close R and
start it up again. Also i am running R under Windows.> > See ?gc, which does
the clearing.> > However, unless you study the memory allocation in detail
(which you > cannot do from R code), you don't actually know that this is the
problem. > More likely is that you have fragmentation of your 32-bit address
space: > see ?"Memory-limits".> > Without any idea what memory you have and
what 'huge' means, we can only > make wild guesses. It might be worth raising
the memory limit (the > --max-mem-size flag).> > >> > thanks,> >> > Monica> >
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