On 28/02/2017 5:17 PM, Patrick Schratz wrote:
Thanks Duncan, that was the problem! Although the Rbuildignore entry pointed to the main dir
No, it contains patterns, not paths, and is matched "case-insensitively against the file and directory names relative to the top-level package source directory". Put ^ at the beginning if you want to refer to the main dir.
Hadley, reporting what gets omitted might be a good suggestion, but it might report too much in a package with compiled code (the .o files will generally be omitted; rgl has 51 of those in src...).
Duncan Murdoch and my .bib file was lying under vignettes/...
That Rbuildignore entry was a leftover when my .bib file was initially lying in the top directory and hence was throwing notes during R CMD check. Afterwards I used full paths in the vignette to specify the .bib location. This approach works fine until you submit to CRAN which of course cannot deal with full paths (and you forget about that you used a full path when releasing). @hadley Could be useful as most often you do not think of possible leftover entries in Rbuildignore... 2017-02-28 18:57 GMT+01:00 Duncan Murdoch <murdoch.dun...@gmail.com <mailto:murdoch.dun...@gmail.com>>: On 28/02/2017 10:44 AM, Patrick Schratz wrote: When building the vignette using R CMD Build or `devtools::build_vignette()` everything works fine. However, during R CMD check I get the following ** checking running R code from vignettes ...* * ‘sperrorest-vignette.Rmd’ using ‘UTF-8’ ... OK* * NONE* ** checking re-building of vignette outputs ... WARNING* *Error in re-building vignettes:* * ...* *pandoc-citeproc: Could not find Biblio.bib* *CallStack (from HasCallStack):* * error, called at src/Text/CSL/Pandoc.hs:224:39 in pandoc-citeproc-0.10.4.1-EdjBizYp62fCPHef3CymGR:Text.CSL.Pandoc* *pandoc: Error running filter /usr/local/bin/pandoc-citeproc* *Filter returned error status 1* *Error: processing vignette 'sperrorest-vignette.Rmd' failed with diagnostics:* *pandoc document conversion failed with error 83* *Execution halted* The .bib file is lying in `/vignettes`. There is a similar question on SO <http://stackoverflow.com/questions/41126556/any-way-of-attaching-csl-bib-files-by-using-knitcitations-package <http://stackoverflow.com/questions/41126556/any-way-of-attaching-csl-bib-files-by-using-knitcitations-package>> but the answer does not address the problem. When using full paths everything is fine. However, I cannot use full paths when submitting to CRAN. If you want to check on your own, please use the `dev` branch; https://github.com/pat-s/sperrorest/tree/dev <https://github.com/pat-s/sperrorest/tree/dev> pandoc-citeproc: stable 0.10.4.1 (bottled), HEAD pandoc: stable 1.19.2.1 (bottled), HEAD Your .Rbuildignore file says not to include Biblio.bib. Don't do that. Duncan Murdoch
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