On 21.12.2017 18:22, Henrik Bengtsson wrote:
Uwe/Kurt, is this
You mean the new check? This is R.
controlled by R itself or by the host system? I
suspect one of my R.filesets tests(*) fails (since a few days) because
of this, but it might actually be a false positive. I fail to
reproduce it on Ubuntu 16.04 with:
* using R Under development (unstable) (2017-12-20 r73933)
* using platform: x86_64-pc-linux-gnu (64-bit)
My test tries to verify that it can write to tempdir() using its
*relative* path (if such is possible) - a test that effectively does:
abs <- tempfile()
setwd(dirname(abs))
getwd()
[1] "/tmp/Rtmpa9riPQ"
rel <- file.path("..", "..", abs)
rel <- gsub("//", "/", rel, fixed = TRUE)
rel
[1] "../../tmp/Rtmpa9riPQ/file3251441e380d
cat("hello", file = res)
file = rel, I guess.
and fails in that last write on 'r-devel-linux-x86_64-debian-gcc'. It
could, of course, be a bug in my code that is now being revealed, but
these tests been in place for many years, possibly more than a decade.
(*) https://cran.r-project.org/web/checks/check_results_R.filesets.html
Well, as this is also shown in R-release on Kurt's machines, I suspect
this is either a problem where the directory you are working in is a
link and the deriving the relative path fails or there is no space left
in tempdir() ...
In both cases, please ask Kurt who is on vacation, too.
Best,
Uwe
Thxs,
Henrik
On Thu, Dec 21, 2017 at 2:21 AM, Uwe Ligges
<lig...@statistik.tu-dortmund.de> wrote:
This is a new check:
You must not write into the user's filespace without explicit agreement by
the user (by specifying path/name).
Note that some users won't even have permissions to write into the package's
installation directory if that is set up site wide by an admin, for example.
So please use tempdir() in the examples.
Best,
Uwe Ligges
On 21.12.2017 09:21, Blume Christine wrote:
Hi Cathy,
I also had troubles with debian (Fedora only gave warnings) and no
problems with other systems. Mine was related to me writing a file (or
rather trying to write) in a working directory other than tempdir (can be
retrieved by tempdir()). I now write it to tempdir and then set the old
working directory again at the end of the example. Perhaps that is somehow
helpful for your case too?
I can highly recommend to test your tar.gz file with the check() function
of the rhub package. You can for example run check("pathtoyourpackage",
platform = "debian-gcc-devel") or
check_for_cran("pathtoyourpackage", platform = "debian-gcc-devel"), i.e.
test your package on debian without troubles.
Best,
Christine
-----Ursprüngliche Nachricht-----
Von: R-package-devel [mailto:r-package-devel-boun...@r-project.org] Im
Auftrag von Cathy Lee Gierke
Gesendet: Donnerstag, 21. Dezember 2017 07:15
An: R Package Development
Betreff: [R-pkg-devel] File name error
I am getting the following error from the auto-checks when trying to
submit a package to CRAN:
r-devel-linux-x86_64-debian-gcc
<https://cran.r-project.org/web/checks/check_flavors.html#r-devel-linux-x86_64-debian-gcc>
3.0.0.2 3.63 56.71 60.34 ERROR
<https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/CATkit-00check.html>
Error in pdf(file = fileName4, width = 8, height = 10) :
cannot open file
'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/CATkit/extdata/activity-stress-c57-2-part.txt--20Dec2017--03-51-46CAToutput.pdf'
Since this works for ALL other flavors, I am assuming it may be some file
name restrictions unique to debian-gcc??? I can't think what else would
cause it to fail only in the OS.
debian doesn't like "--"?
Cathy Lee Gierke
*“Darkness cannot drive out darkness: only light can do that. Hate cannot
drive out hate: only love can do that.” * *“The arc of the moral universe is
long, but it bends towards justice.”* *“Nothing in the world is more
dangerous than sincere ignorance and conscientious stupidity.” *
*“Never forget that everything Hitler did in Germany was legal.” *
*“Forgiveness is not an occasional act, it is a constant attitude.” *
*“Injustice anywhere is a threat to justice everywhere.” *
― Martin Luther King Jr.
<http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_>
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