I am developing a package in R, but I encountered the below problems,
kindly assist.
Updating relrisks documentation
Loading relrisksWarning: The existing 'NAMESPACE' file was not
generated by roxygen2, and will not be overwritten.-- Building
------------------------------------------------------------- relrisks
--Setting env vars:
* CFLAGS : -Wall -pedantic -fdiagnostics-color=always
* CXXFLAGS : -Wall -pedantic -fdiagnostics-color=always
* CXX11FLAGS: -Wall -pedantic
-fdiagnostics-color=always-------------------------------------------------------------------------------------v
checking for file
'C:\Users\DrIOloyede\Documents\relrisks/DESCRIPTION' (1.6s)-
preparing 'relrisks': (3.1s)v checking DESCRIPTION meta-information-
checking for LF line-endings in source and make files and shell
scripts (845ms)- checking for empty or unneeded directories-
building 'relrisks_0.1.0.tar.gz'
-- Checking -------------------------------------------------------------
relrisks --Setting env vars:
* _R_CHECK_CRAN_INCOMING_REMOTE_: FALSE
* _R_CHECK_CRAN_INCOMING_ : FALSE
* _R_CHECK_FORCE_SUGGESTS_ : FALSE-- R CMD check
------------------------------------------------------------------
using log directory 'C:/Users/DrIOloyede/Documents/relrisks.Rcheck'
(2.3s)- using R version 3.5.1 (2018-07-02)- using platform:
x86_64-w64-mingw32 (64-bit)- using session charset: ISO8859-1- using
options '--no-manual --as-cran' (1.3s)v checking for file
'relrisks/DESCRIPTION'- checking extension type ... Package- this is
package 'relrisks' version '0.1.0'- package encoding: UTF-8v
checking package namespace information ...v checking package
dependencies (3m 54.2s)v checking if this is a source package ...v
checking if there is a namespacev checking for executable files
(982ms)v checking for hidden files and directoriesv checking for
portable file names ...v checking serialization versionsv checking
whether package 'relrisks' can be installed (7.8s)v checking
installed package size (533ms)v checking package directoryv checking
DESCRIPTION meta-information (1s)N checking top-level files ...
Non-standard files/directories found at top level:
'rrisks.Rmd' 'rrisks.html'v checking for left-over filesv
checking index informationv checking package subdirectories (517ms)v
checking R files for non-ASCII characters (482ms)v checking R files
for syntax errors (460ms)v checking whether the package can be loaded
(967ms)v checking whether the package can be loaded with stated
dependencies (342ms)v checking whether the package can be unloaded
cleanly (451ms)v checking whether the namespace can be loaded with
stated dependencies (455ms)v checking whether the namespace can be
unloaded cleanly (563ms)v checking loading without being on the
library search path (705ms)v checking dependencies in R code (352ms)v
checking S3 generic/method consistency (1.2s)v checking replacement
functions (335ms)v checking foreign function calls (469ms)v checking
R code for possible problems (8.9s)v checking Rd files (582ms)v
checking Rd metadata (370ms)v checking Rd line widths (359ms)v
checking Rd cross-references (2.2s)v checking for missing
documentation entries (674ms)v checking for code/documentation
mismatches (2.1s)W checking Rd \usage sections (907ms)
Undocumented arguments in documentation object 'rrci'
'coefs' 'se' 'df'
Documented arguments not in \usage in documentation object 'rrci':
'coefficients'
Undocumented arguments in documentation object 'rrcip'
'coefs' 'se' 'df'
Documented arguments not in \usage in documentation object 'rrcip':
'coefficients'
Undocumented arguments in documentation object 'rrciqr'
'coefs' 'se' 'iqr' 'df'
Documented arguments not in \usage in documentation object 'rrciqr':
'coefficients'
Undocumented arguments in documentation object 'rrciqrp'
'coefs' 'se' 'iqr' 'df'
Documented arguments not in \usage in documentation object 'rrciqrp':
'coefficients'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.v checking Rd contents (2.5s)v checking for
unstated dependencies in examples (453ms)- checking examples ... NONE
(841ms)
See
'C:/Users/DrIOloyede/Documents/relrisks.Rcheck/00check.log'
for details.
-- R CMD check results -------------------------------------
relrisks 0.1.0 ----
Duration: 4m 36.5s
> checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'rrci'
'coefs' 'se' 'df'
Documented arguments not in \usage in documentation object 'rrci':
'coefficients'
Undocumented arguments in documentation object 'rrcip'
'coefs' 'se' 'df'
Documented arguments not in \usage in documentation object 'rrcip':
'coefficients'
Undocumented arguments in documentation object 'rrciqr'
'coefs' 'se' 'iqr' 'df'
Documented arguments not in \usage in documentation object 'rrciqr':
'coefficients'
Undocumented arguments in documentation object 'rrciqrp'
'coefs' 'se' 'iqr' 'df'
Documented arguments not in \usage in documentation object 'rrciqrp':
'coefficients'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
> checking top-level files ... NOTE
Non-standard files/directories found at top level:
'rrisks.Rmd' 'rrisks.html'
0 errors v | 1 warning x | 1 note xError: R CMD check found
WARNINGsExecution halted
Exited with status 1.
#' @title Computing Relative Risks, Confidence Interval & P-Values.
#'
#' @param coefs Numeric value of the coefficients of GAM and GLM.
#' @param se Numeric value of the standard errors of GAM and GLM.
#' @param df Numeric value of the different between the number of
rows and columns of explanatory variables.
#' @return The sequence of the RR,CI & P-values.
#' @export
###RR & Ci
--
Website <http://www.unilorin.edu.ng>, Weekly Bulletin
<http://www.unilorin.edu.ng/index.php/bulletin> UGPortal
<http://uilugportal.unilorin.edu.ng/> PGPortal
<https://uilpgportal.unilorin.edu.ng/>
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