blurfle$ cat sped.Rcheck/00check.log * using log directory ‘/home/geyer/Software/sped/package/sped.Rcheck’ * using R Under development (unstable) (2020-03-10 r77920) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--as-cran’ * checking for file ‘sped/DESCRIPTION’ ... OK * this is package ‘sped’ version ‘0.1’ * checking CRAN incoming feasibility ... NOTE Maintainer: ‘Charles J. Geyer <char...@stat.umn.edu>’
New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘sped’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Variables with usage in documentation object 'alberta' but not in code: ‘alberta’ * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... OK Running ‘foo.R’ * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 1 NOTE blurfle$ I do not get this warning when --as-cran is omitted. I have never seen the warning before. The Rd file is blurfle$ cat sped/man/alberta.Rd \name{alberta} \docType{data} \alias{alberta} \title{Pedigree Data on Equus przewalskii in Alberta} \description{ Pedigree of Asian wild horse (also called Mongolian wild horse) \emph{Equus przewalskii} individuals living in Alberta, Canada in 1988. } \usage{alberta} \format{ A matrix with 69 rows giving (individual, father, mother) triplets. The column labels are \code{ind}, \code{pa}, and \code{ma}. The names (which are numbers) are studbook numbers. There are 82 individuals in this pedigree in all. There are \eqn{82 - 69 = 13} founders. } \examples{ library(sped) data(alberta) } \keyword{datasets} blurfle$ And this is AFAICS what Section 2.1.2 of Writing R Extensions (R-devel version) says it should be. So what is this warning about? -- Charles Geyer Professor, School of Statistics Resident Fellow, Minnesota Center for Philosophy of Science University of Minnesota char...@stat.umn.edu [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel