On 06.04.2021 19:26, Robert M. Flight wrote:
Andrew,
I think if you want to include a Bioconductor dependency, then I think you
add the "biocViews:" line to your description file to enable bioconductor
Not needed for CRAN.
You simply need to declare the dependency, but BioC 3.13 is what we
should use to check with R-devel and that was recetnly still pretty
iunstable.
Best,
Uwe Ligges
package installation.
See this answer on Bioinformatics stackexchange:
https://bioinformatics.stackexchange.com/a/3375/51
Hope that helps!
-Robert
On Tue, Apr 6, 2021 at 1:14 PM Andrew Dhawan <adha...@qmed.ca> wrote:
Thank you both very kindly - I have addressed both notes. I am still
wondering though about the RankProd dependency error - any insight into
this?
Thanks!
Andrew
On Tue, Apr 6, 2021 at 11:58 AM Uwe Ligges <
lig...@statistik.tu-dortmund.de>
wrote:
On 06.04.2021 17:39, Patrick Giraudoux wrote:
I had a similar problem with intepreting "notes" in pgirmess checks.
Some are lethal and lead to rejection and some not (just informative
comments). Fortunately Uwe has been kind enough to tell me what I
missed
(I thought that all notes were just "informative").
Would it be possible to call lethal notes "errors" to keep us aware
that
we must really do something with them and fix what is actually a
problem?
These are Notes as it may not be a serious issue or may be a false
positive, nevertheless, we like to get clean packages to CRAN.
WARNINGs and ERRORs will never be accepted.
The policies clearly say that significant Notes have to be addressed.
The only Note that is always acceptable is the CRAN maintainer Note
about the package maintainer's address. All other Notes should be fixed
generally or need manual attention in case of the really very few
exceptions.
Best,
Uwe Ligges
Best,
Patrick
Le 06/04/2021 à 17:33, Uwe Ligges a écrit :
Two Notes:
Found the following (possibly) invalid URLs:
URL: http://imagemagick.org/script/download.php (moved to
https://imagemagick.org/script/download.php)
From: inst/doc/vignette.html
Status: 200
Message: OK
Please change http --> https, add trailing slashes, or follow moved
content as appropriate.
* checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
Simply omit the field if you have no data.
Best,
Uwe Ligges
On 06.04.2021 16:27, Andrew Dhawan wrote:
Dear all,
I am a bit puzzled by this error for the sigQC package being uploaded
to
CRAN. Checks on my end pass without issue. There is one error
regarding the
bioConductor dependency RankProd that comes up only on the Debian OS
when
checking. See here for further details:
https://win-builder.r-project.org/incoming_pretest/sigQC_0.1.22_20210406_110708/
I am not sure how to resolve this - it seems to me that the
dependency
*should* be available across platforms, and short of removing the
dependency (which we rely on a fair bit), I'm not sure what we can
do.
Any thoughts or suggestions would be massively appreciated.
Thank you so kindly!
Andrew
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