That does not solve the issue. First, the html file that's already there is what is desired. But I believe that regardless R CMD will rebuild the package vignettes from scratch. I tried removing the html and recreating the package but I end up with the same result in the .tar.gz file. The central question is why this difference exists between R CMD and building vignettes otherwise.
Eric. On Fri, Dec 10, 2021 at 10:25 AM Duncan Murdoch <murdoch.dun...@gmail.com> wrote: > Just delete the .html output from earlier runs before you run R CMD > build, and it will have no choice but to rebuild them. > > Duncan Murdoch > > On 10/12/2021 9:29 a.m., Eric Weine wrote: > > Hello, > > > > Sorry yes, I think that my initial post on stack overflow is a bit > > misleading. I have checked the file that is built when I run "R CMD > > build ...", and it looks like what is on CRAN. The question is why is > > that different from when I run "devtools::build_vignette" or when I just > > knit the vignette in RStudio. I know that "R CMD build" creates the > > vignette each time from scratch. Should I update my R version or > > something? I'm just trying to isolate the difference between R CMD build > > and the other tools I have to knit vignette so I can ensure they are > > consistent. > > > > Thanks for the help, > > > > Eric. > > > > Date: Thu, 9 Dec 2021 16:52:09 -0500 > > From: Eric Weine <ericwein...@gmail.com <mailto: > ericwein...@gmail.com>> > > To: r-package-devel@r-project.org <mailto: > r-package-devel@r-project.org> > > Subject: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release > > Message-ID: > > > > <CAO=DOOayQEiiunh=0hrzayidhjjgalq2ekrfnatsbbl0+yu...@mail.gmail.com > > <mailto:0hrzayidhjjgalq2ekrfnatsbbl0%2byu...@mail.gmail.com>> > > Content-Type: text/plain; charset="utf-8" > > > > Hello, > > > > I'm having an issue where my vignette created using R CMD build does > not > > match the vignette created using devtools::build_vignettes or when I > > knit > > with RStudio. I posted about this issue on stack overflow here > > < > https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 > > < > https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 > >>. > > Originally I thought that this might be related to an omission in the > > DESCRIPTION file, but this no longer seems to be the case. Here is a > > repost > > of my initial stack overflow post: > > > > I recently released a vignette with version 1.1 of my R package. The > Rmd > > for the vignette can be found here > > < > https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd > > < > https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd > >>. > > When I create the vignette locally, I see author information and the > > table > > of contents at the top of the vignette, as expected. However, when I > > submitted this package to CRAN and the vignette was created there > > < > https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html > > < > https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html > >>, > > I no longer see the table of contents or author information. Does > anyone > > know why this may be happening? > > > > Thanks, > > > > Eric. > > > > [[alternative HTML version deleted]] > > > > > > > > > > ------------------------------ > > > > Date: Fri, 10 Dec 2021 11:41:31 +1300 > > From: Simon Urbanek <simon.urba...@r-project.org> > > To: Eric Weine <ericwein...@gmail.com <mailto:ericwein...@gmail.com > >> > > Cc: r-package-devel@r-project.org <mailto: > r-package-devel@r-project.org> > > Subject: Re: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release > > Message-ID: <52ec72dc-b583-4d1b-97c3-979ec96ff...@r-project.org> > > Content-Type: text/plain; charset="us-ascii" > > > > Eric, > > > > did you check the contents of the package file you submitted? The > > session info in the vignette is quite old, and the build has been > > packaged by you so I don't think it has anything to do with CRAN, > > but to make sure, check the file you submitted. > > > > Cheers, > > Simon > > > > > > > On Dec 10, 2021, at 10:52 AM, Eric Weine <ericwein...@gmail.com > > <mailto:ericwein...@gmail.com>> wrote: > > > > > > Hello, > > > > > > I'm having an issue where my vignette created using R CMD build > > does not > > > match the vignette created using devtools::build_vignettes or > > when I knit > > > with RStudio. I posted about this issue on stack overflow here > > > > > < > https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 > > < > https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 > >>. > > > Originally I thought that this might be related to an omission in > the > > > DESCRIPTION file, but this no longer seems to be the case. Here > > is a repost > > > of my initial stack overflow post: > > > > > > I recently released a vignette with version 1.1 of my R package. > > The Rmd > > > for the vignette can be found here > > > > > < > https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd > > < > https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd > >>. > > > When I create the vignette locally, I see author information and > > the table > > > of contents at the top of the vignette, as expected. However, > when I > > > submitted this package to CRAN and the vignette was created there > > > > > < > https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html > > < > https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html > >>, > > > I no longer see the table of contents or author information. Does > > anyone > > > know why this may be happening? > > > > > > Thanks, > > > > > > Eric. > > > > > > [[alternative HTML version deleted]] > > > > > > ______________________________________________ > > > R-package-devel@r-project.org > > <mailto:R-package-devel@r-project.org> mailing list > > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > > > > > > > > > > > > > ------------------------------ > > > > Date: Fri, 10 Dec 2021 05:38:15 -0500 > > From: Duncan Murdoch <murdoch.dun...@gmail.com > > <mailto:murdoch.dun...@gmail.com>> > > To: Eric Weine <ericwein...@gmail.com <mailto:ericwein...@gmail.com > >> > > Cc: r-package-devel@r-project.org <mailto: > r-package-devel@r-project.org> > > Subject: Re: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release > > Message-ID: <02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com > > <mailto:02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com>> > > Content-Type: text/plain; charset="utf-8"; Format="flowed" > > > > On 09/12/2021 5:41 p.m., Simon Urbanek wrote: > > > Eric, > > > > > > did you check the contents of the package file you submitted? The > > session info in the vignette is quite old, and the build has been > > packaged by you so I don't think it has anything to do with CRAN, > > but to make sure, check the file you submitted. > > > > Yes, I think the tarball contained an old version of the .html file. > > The timestamp on it is the same as on many other items in the > tarball, > > and that likely means it was put into inst/doc by the build process. > > > > Eric, on Github I notice you have a committed copy of the HTML file > in > > the vignettes directory. This could be the cause of your problem. > > Normally you should only have the vignette source in the vignettes > > directory. I wouldn't be surprised if git the build process thinks > the > > .html file is newer than the .Rmd and doesn't rebuild it, putting a > > stale copy into the tarball. > > > > Duncan Murdoch > > > > > > > > Cheers, > > > Simon > > > > > > > > >> On Dec 10, 2021, at 10:52 AM, Eric Weine <ericwein...@gmail.com > > <mailto:ericwein...@gmail.com>> wrote: > > >> > > >> Hello, > > >> > > >> I'm having an issue where my vignette created using R CMD build > > does not > > >> match the vignette created using devtools::build_vignettes or > > when I knit > > >> with RStudio. I posted about this issue on stack overflow here > > >> > > < > https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 > > < > https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 > >>. > > >> Originally I thought that this might be related to an omission > > in the > > >> DESCRIPTION file, but this no longer seems to be the case. Here > > is a repost > > >> of my initial stack overflow post: > > >> > > >> I recently released a vignette with version 1.1 of my R package. > > The Rmd > > >> for the vignette can be found here > > >> > > < > https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd > > < > https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd > >>. > > >> When I create the vignette locally, I see author information and > > the table > > >> of contents at the top of the vignette, as expected. However, > when I > > >> submitted this package to CRAN and the vignette was created there > > >> > > < > https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html > > < > https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html > >>, > > >> I no longer see the table of contents or author information. > > Does anyone > > >> know why this may be happening? > > >> > > >> Thanks, > > >> > > >> Eric. > > >> > > >> [[alternative HTML version deleted]] > > >> > > >> ______________________________________________ > > >> R-package-devel@r-project.org > > <mailto:R-package-devel@r-project.org> mailing list > > >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > > >> > > > > > > ______________________________________________ > > > R-package-devel@r-project.org > > <mailto:R-package-devel@r-project.org> mailing list > > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > > > > > > > > ********************************************** > > > > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
