Hello, I ran (1) R CMD check --as-cran mypackage.tar.gz without any error. But it gives an error while running the package on (2) current version-of-R-devel as my package uses Bioconductor package (that does not run on R version 4.3). Please help me with any idea how to fix this error. I have attached the check results below.
Thanks, Sarmistha ********************************************** R CMD check results: ********************************************** (1) * using log directory ‘/.../multiomicsR.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--as-cran’ * checking for file ‘multiomicsR/DESCRIPTION’ ... OK * this is package ‘multiomicsR’ version ‘0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: ‘Sarmistha Das <sarmistha....@stjude.org>’ New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘multiomicsR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed iosearchR 59.22 5.586 211.242 * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘GDCdata’ ‘MANIFEST.txt’ ‘TCGAbiolinks’ ‘clinical_InfoFile.txt’ ‘omic1_Group1.txt’ ‘omic1_Group2.txt’ ‘omic2_Group1.txt’ ‘omic2_Group2.txt’ ‘pathway_genes.csv’ ‘pathway_omic1.expr.csv’ ‘pathway_omic2.expr.csv’ ‘samplesheet_file.txt’ ‘status.txt’ ‘subid.all.0.txt’ ‘subid.all.1.txt’ * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs *********************************************** *********************************************** (2) On windows-x86_64-devel (r-devel) checking package dependencies ... ERROR Packages required but not available: 'AnnotationDbi', 'KEGGREST', 'org.Hs.eg.db', 'TCGAbiolinks' See section 'The DESCRIPTION file' in the 'Writing R Extensions' manual. 1 error ✖ | 0 warnings ✔ | 0 notes ✔ ************************************************************************* Sarmistha Das, PhD. (she/her) Postdoctoral Research Associate Department of Biostatistics, St. Jude Children's Research Hospital 262 Danny Thomas Place Room R6025A (Longinotti Building); Mail Stop 768 Memphis, TN 38105 Email: sarmistha....@stjude.org Phone: 901-595-1160 ________________________________ Email Disclaimer: www.stjude.org/emaildisclaimer Consultation Disclaimer: www.stjude.org/consultationdisclaimer [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel