On 6 July 2023 at 14:31, Vincent van Hees wrote: | Thanks, in that case the REPLEX for the issue may need to be: | | > remember = Sys.getenv("_R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_") | > Sys.setenv("_R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_" = TRUE) | > data.frame(time = Sys.time()) | time | 1 2023-07-06 14:29:37 | > data.frame(time = as.POSIXlt(Sys.time())) | time | 1 2023-07-06 14:29:37 | Warning message: | Direct call of 'as.data.frame.POSIXct()' is deprecated. Use | 'as.data.frame.vector()' or 'as.data.frame()' instead | > Sys.setenv("_R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_" = remember)
Does _not_ happen in a plain R session. Does happen when `library(tidyverse)` is executed first. May come from `tibble` or `vectors`, I have a habit of not using those much. Dirk | Vincent | | On Thu, 6 Jul 2023 at 10:41, Tim Taylor <tim.tay...@hiddenelephants.co.uk> | wrote: | | > Apologies - I've not had enough caffeine just yet. The reprex below | > highlights the issue but I think the code which implemented the change | > *may* need tweaking not lapply. | > | > Tim | > | > On 06/07/2023 09:26, Tim Taylor wrote: | > > This *may* be an issue in lapply. Let's see what others day. Reprex | > > below | > > | > > Sys.setenv("_R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_" = TRUE) | > > dat <- Sys.Date() | > > as.data.frame(dat) | > > #> dat | > > #> 1 2023-07-06 | > > lapply(dat, as.data.frame) | > > #> Warning: Direct call of 'as.data.frame.Date()' is deprecated. Use | > > #> 'as.data.frame.vector()' or 'as.data.frame()' instead | > > #> [[1]] | > > #> X[[i]] | > > #> 1 2023-07-06 | > > | > > Tim | > > | > > On 06/07/2023 08:54, Vincent van Hees wrote: | > >> Dear all, | > >> | > >> I see the following warning in my package test results: | > >> | > >> ``` | > >> Warning | > >> Direct call of 'as.data.frame.POSIXct()' is deprecated. Use | > >> 'as.data.frame.vector()' or 'as.data.frame()' instead | > >> ``` | > >> | > >> The warning is not always there and I struggle to make it | > >> reproducible. I | > >> have encountered it in both Ubuntu 22.04 and in Windows 11, in both R | > >> 4.3.0 | > >> and 4.3.1, in both RStudio and in an GitHub Actions environment (example | > >> <https://github.com/wadpac/GGIR/actions/runs/5463862340/jobs/9945096566>). | > | > >> | > >> The warning gives the impression that I am doing something that R no | > >> longer | > >> supports. However, I am not using the command as.data.frame.POSIXct() | > >> anywhere directly in my code. | > >> | > >> When I dive into the code where the warnings occur I see patterns like: | > >> | > >> ``` | > >> now = Sys.time() | > >> df = data.frame (time = seq(now, now + 10, by =1), B = 1:11) | > >> ``` | > >> | > >> (this is a simplification of for example: | > >> | > https://github.com/wadpac/GGIR/blob/master/tests/testthat/test_read.myacc.csv.R | > >> | > >> ) | > >> | > >> Does this mean I am discouraged from putting a vector with POSIXct | > >> values | > >> in a data.frame? | > >> If yes, what would be the recommended work around? | > >> | > >> I have been trying to find documentation or online discussions about | > >> this | > >> warning but no luck so far. I see R NEWS | > >> <https://cran.r-project.org/doc/manuals/r-release/NEWS.html> mentions | > >> updates to POSIXct related objects several times in the past year but | > >> those | > >> seem to be different issues. | > >> | > >> Best, | > >> | > >> Vincent | > >> | > >> [[alternative HTML version deleted]] | > >> | > >> ______________________________________________ | > >> R-package-devel@r-project.org mailing list | > >> https://stat.ethz.ch/mailman/listinfo/r-package-devel | > > | > > ______________________________________________ | > > R-package-devel@r-project.org mailing list | > > https://stat.ethz.ch/mailman/listinfo/r-package-devel | > | | [[alternative HTML version deleted]] | | ______________________________________________ | R-package-devel@r-project.org mailing list | https://stat.ethz.ch/mailman/listinfo/r-package-devel -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel