On 08/02/2024 4:24 a.m., David Hugh-Jones wrote:
Hi all,
I'm trying to upload a new version of my "huxtable" package. It is
currently failing reverse dependency checks for two packages (homnormal and
RSStest). The relevant failures are below.
I got this failure one time, and fixed the problem, which relates to
mistakenly relying on the Suggested: knitr package (see here for the
commit: https://github.com/hughjonesd/huxtable/commit/5a3edc). After the
commit, reverse dependency checks for homnormal and RSStest pass on my
machine, when testing either with revdepcheck::revdep_check or
tools::check_packages_in_dir, and even when knitr is not installed. But,
after I uploaded the new package to CRAN, the same failure recurred.
My new release candidate had the same version number as the previous one
(which had failed the revdep check, and therefore not been published on
CRAN). Is it possible that CRAN just tested the old version again?
The CRAN policy on re-submission says "Increasing the version number at
each submission reduces confusion so is preferred even when a previous
submission was not accepted."
So yes, I think confusion with the previous submission could have happened.
Duncan Murdoch
If not, then can anyone suggest the best way to debug a revdep check on as
close a setup to the CRAN machines as possible?
Cheers,
David
Git tag for the last CRAN submission:
https://github.com/hughjonesd/huxtable/releases/tag/v5.5.4-rc3
Info from the CRAN email:
--
Debian: <
https://win-builder.r-project.org/incoming_pretest/huxtable_5.5.4_20240205_164815/reverseDependencies/summary.txt
RSStest, homnormal
Log dir: <
https://win-builder.r-project.org/incoming_pretest/huxtable_5.5.4_20240205_164815/
The files will be removed after roughly 7 days.
Pretests:
Windows: <
https://win-builder.r-project.org/incoming_pretest/huxtable_5.5.4_20240205_164815/Windows/00check.log
Debian: <
https://win-builder.r-project.org/incoming_pretest/huxtable_5.5.4_20240205_164815/Debian/00check.log
--
Changes to worse in reverse depends:
Package: homnormal
Check: examples
New result: ERROR
Running examples in ‘homnormal-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Brown_Forsythe
> ### Title: Brown-Forsythe Test for Homogeniety
> ### Aliases: Brown_Forsythe
>
> ### ** Examples
>
> data(FH_data)
> x1=FH_data$SurvivalTime
> x2=FH_data$HospitalNo
> Brown_Forsythe(x1,x2)
Error in loadNamespace(x) : there is no package called ‘knitr’
Calls: Brown_Forsythe ... loadNamespace -> withRestarts -> withOneRestart
-> doWithOneRestart
Execution halted
Package: RSStest
Check: examples
New result: ERROR
Running examples in ‘RSStest-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: teststat_MRSS
> ### Title: Median Ranked Set Sampling Test
> ### Aliases: teststat_MRSS
>
> ### ** Examples
>
> x1=matrix(c(1,2.3, 3.4,4.5,5.6,4 ),nrow=3)
> x2=matrix(c(2,3.2, 4.2,6.5,4.6,6 ),nrow=3)
> teststat_MRSS(x1,x2,tn=1000)
Error in loadNamespace(x) : there is no package called ‘knitr’
Calls: teststat_MRSS ... loadNamespace -> withRestarts -> withOneRestart
-> doWithOneRestart
Execution halted
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