Good (but astonishing) news:
1. (As noted in previous message)
After having removed r-base-core and
installed back r-base and r-base-dev
the binary installation of robustbase
apt-get install r-cran-robustbase
still gives in R the same error as before:
require(robustbase)
Loading required package: robustbase
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/usr/lib/R/site-library/robustbase/libs/robustbase.so':
libRlapack.so: cannot open shared object file: No such file or directory
2. After removing the binary
apt-get remove r-cran-robustbase
The source installation using install.packages("robustbase") from within
R works fine. The gcc step now works using lapack:
gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o
qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -llapack -lblas
-lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib -lR
Thank you all.
Agus
Michael Rutter wrote:
Once you have reinstalled the packages, you should re-install robustbase.
sudo R
install.packages("robustbase")
If at that point it fails, I'm not sure what can be done. It would seem
you system has a flaw and a re-install would be best. Jaunty (9.04)
installs very quickly and works great. I would give that a try.
Michael
Agustin Lobo wrote:
No. What I have is what is listed in
http://cran.r-project.org/bin/linux/ubuntu/
deb http://<my.favorite.cran.mirror>/bin/linux/ubuntu hardy/
which in my case is
deb http://cran.r-project.org/bin/linux/ubuntu hardy/
Should I include the one you suggest? Should I replace the one
I have with this one?
Agus
Michael Rutter wrote:
Agus,
Do you have this in your sources list:
deb http://lib.stat.cmu.edu/R/CRAN/bin/linux/ubuntu hardy/
The address could/should be a different mirror, but there needs to be
a cran mirror in you list somewhere.
Michael
Agustin Lobo wrote:
Michael:
I do have the backports activated. This is the entry in my
sources.list:
deb http://archive.ubuntu.com/ubuntu/ hardy-backports restricted
main multiverse universe
deb-src http://archive.ubuntu.com/ubuntu/ hardy-backports restricted
main multiverse universe
And this is the output to what you suggested.
r...@alobo-laptop:/home/alobo# dpkg --get-selections | grep r-base
r-base-core install
r-base-dev install
r-base-html install
r...@alobo-laptop:/home/alobo# dpkg --get-selections | grep r-cran
r-cran-abind deinstall
r-cran-boot install
r-cran-cluster install
r-cran-codetools install
r-cran-effects deinstall
r-cran-foreign install
r-cran-kernsmooth install
r-cran-lattice install
r-cran-matrix install
r-cran-mgcv install
r-cran-nlme install
r-cran-relimp deinstall
r-cran-robustbase install
r-cran-rpart install
r-cran-survival install
r-cran-vr install
My system is uptodate, I regularly install what I'm told by Update
Manager.
I'm going to uninstall and install back r-base from Synaptic.
If I keep having the same problem afterwards, do you expect
that installing everything from sources could solve the problem?
Will it be hard ?
How much time should I pre-allocate?
Thanks
Agus
Michael Rutter wrote:
Agus,
robustbase just installed fine on my stock 8.04 system. Please
make sure that you have added all the repositories and packages
suggested on this page:
http://cran.r-project.org/bin/linux/ubuntu/
Backports are important, and make sure you have r-base-dev
installed. You may also need to be root (via sudo) to install,
although there are instructions for local installation. You can
run the following commands to see what R related packages you have
installed.
dpkg --get-selections | grep r-base
dpkg --get-selections | grep r-cran
Michael
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