On 25 April 2017 at 14:58, Göran Broström wrote: | hello, | | I just installed R-3.4.0 from scratch: | | $ sudo apt install r-base | | but when I try | | > library(survival, lib.loc = "/usr/lib/R/library") | > fit <- coxph(Surv(exit, event) ~ x, data = mort) | | I get | | Error in fitter(X, Y, strats, offset, init, control, weights = weights, : | object 'Ccoxmart' not found | | I was told on R-help that I need to | | > update.packages(checkBuilt = TRUE) | | (and it works), but | | 1. I get two versions of recommended packages, one in | /usr/lib/R/library, and one in
That is from apt / dpkg -- ie pre-packaged. | ~/R/x86_64-pc-linux-gnu-library/3.4 | I could fix a write permission in /usr/lib/R or run R as root. That is from you. The two have ALWAYS been independent. | 2. Installing from scratch should have this fixed automatically, right? False. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian