On Tue, 9 Oct 2018 at 12:25, Ernes Cereku <ernesicer...@gmail.com> wrote: > > Hi, > > Every package I try to install in R i get the same error "had non zero-exit > status". > > I use Ubuntu 18.04.1 LTS > > how can i fix this? Thank you
You probably have packages that were built using R-3.4 (e.g., the distro supplied version). It would be helpful to mention how you installed R-3.5 and whether you prefer to use binary packages or to install from source., You might find Installation of R-3.5 on Ubuntu 18.04 LTS <https://www.r-bloggers.com/installation-of-r-3-5-on-ubuntu-18-04-lts-and-tips-for-spatial-packages/> helpful. > > This shows up when I try install.packages("Rcmdr", dep=T) > > Error : package ‘htmltools’ was installed by an R version with different > internals; it needs to be reinstalled for use with this R version > ERROR: lazy loading failed for package ‘rmarkdown’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/rmarkdown’ > ERROR: dependency ‘shiny’ is not available for package ‘miniUI’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/miniUI’ > ERROR: dependency ‘shiny’ is not available for package ‘crosstalk’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/crosstalk’ > ERROR: dependency ‘arm’ is not available for package ‘mi’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/mi’ > ERROR: dependency ‘rio’ is not available for package ‘car’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/car’ > ERROR: dependencies ‘shiny’, ‘miniUI’ are not available for package > ‘manipulateWidget’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/manipulateWidget’ > ERROR: dependency ‘car’ is not available for package ‘RcmdrMisc’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/RcmdrMisc’ > ERROR: dependency ‘mi’ is not available for package ‘sem’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/sem’ > ERROR: dependencies ‘shiny’, ‘crosstalk’, ‘manipulateWidget’ are not > available for package ‘rgl’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/rgl’ > ERROR: dependencies ‘RcmdrMisc’, ‘car’ are not available for package ‘Rcmdr’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/Rcmdr’ > > The downloaded source packages are in > ‘/tmp/Rtmp96RN5M/downloaded_packages’ > There were 14 warnings (use warnings() to see them) > > --And this show up when I try just install.packages() > > * installing *source* package ‘rio’ ... > ** package ‘rio’ successfully unpacked and MD5 sums checked > ** R > ** inst > ** byte-compile and prepare package for lazy loading > Error : package ‘data.table’ was installed by an R version with different > internals; it needs to be reinstalled for use with this R version > ERROR: lazy loading failed for package ‘rio’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/rio’ > * installing *source* package ‘effects’ ... > ** package ‘effects’ successfully unpacked and MD5 sums checked > ** R > ** inst > ** byte-compile and prepare package for lazy loading > Error : package ‘colorspace’ was installed by an R version with different > internals; it needs to be reinstalled for use with this R version > ERROR: lazy loading failed for package ‘effects’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/effects’ > ERROR: dependency ‘rio’ is not available for package ‘car’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/car’ > ERROR: dependency ‘car’ is not available for package ‘RcmdrMisc’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/RcmdrMisc’ > ERROR: dependencies ‘RcmdrMisc’, ‘car’ are not available for package ‘Rcmdr’ > * removing ‘/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/Rcmdr’ > > The downloaded source packages are in > ‘/tmp/Rtmp96RN5M/downloaded_packages’ > Warning messages: > 1: In install.packages("Rcmdr") : > installation of package ‘rio’ had non-zero exit status > 2: In install.packages("Rcmdr") : > installation of package ‘effects’ had non-zero exit status > 3: In install.packages("Rcmdr") : > installation of package ‘car’ had non-zero exit status > 4: In install.packages("Rcmdr") : > installation of package ‘RcmdrMisc’ had non-zero exit status > 5: In install.packages("Rcmdr") : > installation of package ‘Rcmdr’ had non-zero exit status > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Debian mailing list > R-SIG-Debian@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- George N. White III [[alternative HTML version deleted]] _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian