Dear Robin and Tomas, By changing the CC, I'm hereby trying to move this to R-SIG-Debian (Ubuntu a flavor of Debian) where it belongs ...
Martin >>>>> robin hankin >>>>> on Fri, 1 Mar 2019 21:43:07 +1300 writes: > Still something wrong. I've uncommented the deb-src lines in > sources.list as you suggested (and I thought it couldn't hurt to try > --allow-unauthenticated as well) and: > root@limpet:/etc/apt# apt-get update --allow-unauthenticated > Hit:1 http://nz.archive.ubuntu.com/ubuntu bionic InRelease > Hit:2 http://repo.steampowered.com/steam precise InRelease > Hit:3 http://nz.archive.ubuntu.com/ubuntu bionic-updates InRelease > Hit:4 http://nz.archive.ubuntu.com/ubuntu bionic-backports InRelease > Ign:5 http://cran.rstudio.com/bin/linux/ubuntu bionic/ InRelease > Err:6 http://cran.rstudio.com/bin/linux/ubuntu bionic/ Release > 404 Not Found [IP: 13.35.146.80 80] > Hit:7 https://cloud.r-project.org/bin/linux/ubuntu cosmic-cran35/ > InRelease > Hit:8 http://ppa.launchpad.net/edd/misc/ubuntu bionic InRelease > Hit:9 http://security.ubuntu.com/ubuntu bionic-security InRelease > Hit:10 http://ppa.launchpad.net/marutter/c2d4u/ubuntu bionic InRelease > Ign:11 http://ppa.launchpad.net/marutter/rdev/ubuntu bionic InRelease > Hit:12 http://ppa.launchpad.net/marutter/rrutter3.5/ubuntu bionic InRelease > Hit:13 http://ppa.launchpad.net/teejee2008/ppa/ubuntu bionic InRelease > Err:14 http://ppa.launchpad.net/marutter/rdev/ubuntu bionic Release > 404 Not Found [IP: 91.189.95.83 80] > Ign:15 http://dl.google.com/linux/chrome/deb stable InRelease > Hit:16 http://dl.google.com/linux/chrome/deb stable Release > Reading package lists... Done > E: The repository 'http://cran.rstudio.com/bin/linux/ubuntu bionic/ > Release' does not have a Release file. > N: Updating from such a repository can't be done securely, and is > therefore disabled by default. > N: See apt-secure(8) manpage for repository creation and user > configuration details. > E: The repository 'http://ppa.launchpad.net/marutter/rdev/ubuntu > bionic Release' does not have a Release file. > N: Updating from such a repository can't be done securely, and is > therefore disabled by default. > N: See apt-secure(8) manpage for repository creation and user > configuration details. > root@limpet:/etc/apt# > hankin.ro...@gmail.com > hankin.ro...@gmail.com > On Fri, Mar 1, 2019 at 9:19 PM Tomas Kalibera <tomas.kalib...@gmail.com> wrote: >> >> On 3/1/19 9:03 AM, robin hankin wrote: >> > OK thanks Tomas, but I get >> > >> > >> > OK~ sudo apt-get build-dep r-base >> > Reading package lists... Done >> > E: Unable to find a source package for r-base >> > OK~ >> >> It seems you need to enable source code repositories on your system >> (and then run apt-get update). >> You can enable them in /etc/apt/sources.list, uncomment all lines >> starting with deb-src. >> >> Best >> Tomas >> >> > >> > >> > hankin.ro...@gmail.com >> > >> > >> > On Fri, Mar 1, 2019 at 8:47 PM Tomas Kalibera <tomas.kalib...@gmail.com> wrote: >> >> On 3/1/19 7:10 AM, robin hankin wrote: >> >>> thanks for this guys. >> >>> >> >>> I only compiled pcre myself as a last resort, because of the >> >>> ./configure failure. But AFAICS apt-get reports correct >> >>> installation: >> >>> >> >>> OK~/Downloads/R-devel sudo apt-get install r-base-dev >> >>> Reading package lists... Done >> >>> Building dependency tree >> >>> Reading state information... Done >> >>> r-base-dev is already the newest version (3.5.2-1cosmic). >> >>> 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. >> >>> OK~/Downloads/R-devel >> >> I would just run this >> >> >> >> apt-get build-dep r-base >> >> >> >> that will install all packages needed to _build_ r-base, so including PCRE. >> >> >> >> Best >> >> Tomas >> >> >> >>> config.log gives me: >> >>> >> >>> configure:42208: $? = 0 >> >>> configure:42208: result: yes >> >>> configure:42208: checking for pcre.h >> >>> configure:42208: result: yes >> >>> configure:42208: checking pcre/pcre.h usability >> >>> configure:42208: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 >> >>> conftest.c:289:10: fatal error: pcre/pcre.h: No such file or directory >> >>> #include <pcre/pcre.h> >> >>> ^~~~~~~~~~~~~ >> >>> compilation terminated. >> >>> configure:42208: $? = 1 >> >>> configure: failed program was: >> >>> | /* confdefs.h */ >> >>> | #define PACKAGE_NAME "R" >> >>> | #define PACKAGE_TARNAME "R" >> >>> | #define PACKAGE_VERSION "3 >> >>> >> >>> and >> >>> >> >>> HAVE_UNISTD_H >> >>> | # include <unistd.h> >> >>> | #endif >> >>> | #include <pcre/pcre.h> >> >>> configure:42208: result: no >> >>> configure:42208: checking pcre/pcre.h presence >> >>> configure:42208: gcc -E -I/usr/local/include conftest.c >> >>> conftest.c:256:10: fatal error: pcre/pcre.h: No such file or directory >> >>> #include <pcre/pcre.h> >> >>> ^~~~~~~~~~~~~ >> >>> compilation terminated. >> >>> configure:42208: $? = 1 >> >>> configure: failed program was: >> >>> | /* confdefs.h */ >> >>> | #define PACKAGE_NAME "R" >> >>> | #define PACKAGE_TARNAME "R" >> >>> | #define PACKAGE_VERSION "3.6.0" >> >>> | #define PACKAGE_STRING "R 3.6.0" >> >>> | #define PACKAGE_BUGREPOR >> >>> >> >>> >> >>> >> >>> hankin.ro...@gmail.com >> >>> >> >>> >> >>> >> >>> >> >>> On Mon, Feb 25, 2019 at 9:39 PM Tomas Kalibera <tomas.kalib...@gmail.com> wrote: >> >>>> On 2/25/19 6:25 AM, robin hankin wrote: >> >>>>> Hi there, ubuntu 18.04.2, trying to compile R-devel 3.6.0, svn 76155. >> >>>>> >> >>>>> I am having difficulty compiling R. I think I have pcre installed correctly: >> >>>> You can use >> >>>> >> >>>> apt-get build-dep r-base >> >>>> >> >>>> to install binary Ubuntu packages needed to build R from source, >> >>>> including PCRE, so there should be no need to compile PCRE from source. >> >>>> If you need for some special reason to compile PCRE from source, please >> >>>> see R Admin Manual, section A.1 on how to configure PCRE. The manual >> >>>> also says how to set compilation flags for R to look for headers in >> >>>> other directories. Sometimes it helps to search the config.log when >> >>>> configure fails. If still in trouble, please report how you built PCRE >> >>>> and how you told R where to find it, and the relevant part of >> >>>> config.log, to maximize chances people could offer useful advice. >> >>>> >> >>>> Best, >> >>>> Tomas >> >>>> >> >>>>> OK~/Downloads/R-devel pcretest -C >> >>>>> PCRE version 8.41 2017-07-05 >> >>>>> Compiled with >> >>>>> 8-bit support >> >>>>> UTF-8 support >> >>>>> No Unicode properties support >> >>>>> No just-in-time compiler support >> >>>>> Newline sequence is LF >> >>>>> \R matches all Unicode newlines >> >>>>> Internal link size = 2 >> >>>>> POSIX malloc threshold = 10 >> >>>>> Parentheses nest limit = 250 >> >>>>> Default match limit = 10000000 >> >>>>> Default recursion depth limit = 10000000 >> >>>>> Match recursion uses stack >> >>>>> OK~/Downloads/R-devel >> >>>>> >> >>>>> >> >>>>> But ./configure gives me this: >> >>>>> >> >>>>> [snip] >> >>>>> checking for pcre.h... yes >> >>>>> checking pcre/pcre.h usability... no >> >>>>> checking pcre/pcre.h presence... no >> >>>>> checking for pcre/pcre.h... no >> >>>>> checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... no >> >>>>> checking whether PCRE support suffices... configure: error: pcre >= >> >>>>> 8.20 library and headers are required >> >>>>> OK~/Downloads/R-devel >> >>>>> >> >>>>> can anyone advise? >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> hankin.ro...@gmail.com >> >>>>> >> >>>>> ______________________________________________ >> >>>>> r-de...@r-project.org mailing list >> >>>>> https://stat.ethz.ch/mailman/listinfo/r-devel >> >> > ______________________________________________ > r-de...@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian